Non-Coding RNA Search

rplac_4034.y1

Sequence:


               
               AGGCTGGTTACTGCCTCATGTGATGAAGAACGTGTGTGCGTGTATACATACATAGGCACA
CATACCCTCAACATCCAGGGAGGTTCTGCAGTTGGATCTCCATCTATACTTGCCTTTCAC
AAATGATACAATTGATAGGAGGCTGGCTCCTCCCAGAACTTTCATGCAGAGGCTTGGAAA
CAAGGGAAGCAGTGACCCAATGGAGTCAGCTGCTCCTGGGTGCCAGCAGAGCCATTCAGT
ACAGCCGCCAGGCTGACCAAAGTGGCTTCTAGGAAACCAAGAGTTCAGCACAGCTTAACA
TTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCTGGTTACTGCCTCATGTGATGAAGAACGTGTGTGCGTGTATACATACATAGGCACA
CATACCCTCAACATCCAGGGAGGTTCTGCAGTTGGATCTCCATCTATACTTGCCTTTCAC
AAATGATACAATTGATAGGAGGCTGGCTCCTCCCAGAACTTTCATGCAGAGGCTTGGAAA
CAAGGGAAGCAGTGACCCAATGGAGTCAGCTGCTCCTGGGTGCCAGCAGAGCCATTCAGT
ACAGCCGCCAGGCTGACCAAAGTGGCTTCTAGGAAACCAAGAGTTCAGCACAGCTTAACA
TTTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               111-230, + strand, RNAz p=0.68458

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               111-230, + strand, RNAz p=0.68458

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_005475, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_005475, +

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               37-304, gnl|bosTau2|chr17 (29391004-29390734)
               

               
               37-304, gnl|canFam2|chr26 (12088921-12089167)
               

               
               37-304, gnl|dasNov1|scaffold_10484 (7711-7992)
               

               
               37-304, gnl|hg17|chr12 (110350007-110350255)
               

               
               37-304, gnl|Hg17|chr12 (110350017-110350265)
               

               
               37-304, gnl|loxAfr1|scaffold_15988 (15484-15251)
               

               
               37-304, gnl|mm7|chr5 (121051066-121050950)
               

               
               37-304, gnl|panTro1|chr10 (112955869-112956117)
               

               
               37-304, gnl|rheMac2|chr11 (112390369-112390617)
               

               
               37-304, gnl|rn3|chr12 (35820478-35820618)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-304, gnl|bosTau2|chr17 (29391004-29390734)
               

               
               37-304, gnl|canFam2|chr26 (12088921-12089167)
               

               
               37-304, gnl|dasNov1|scaffold_10484 (7711-7992)
               

               
               37-304, gnl|hg17|chr12 (110350007-110350255)
               

               
               37-304, gnl|Hg17|chr12 (110350017-110350265)
               

               
               37-304, gnl|loxAfr1|scaffold_15988 (15484-15251)
               

               
               37-304, gnl|mm7|chr5 (121051066-121050950)
               

               
               37-304, gnl|panTro1|chr10 (112955869-112956117)
               

               
               37-304, gnl|rheMac2|chr11 (112390369-112390617)
               

               
               37-304, gnl|rn3|chr12 (35820478-35820618)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	37-304, gnl\|bosTau2\|chr17 (29391004-29390734)
	37-304, gnl\|canFam2\|chr26 (12088921-12089167)
	37-304, gnl\|dasNov1\|scaffold_10484 (7711-7992)
	37-304, gnl\|hg17\|chr12 (110350007-110350255)
	37-304, gnl\|Hg17\|chr12 (110350017-110350265)
	37-304, gnl\|loxAfr1\|scaffold_15988 (15484-15251)
	37-304, gnl\|mm7\|chr5 (121051066-121050950)
	37-304, gnl\|panTro1\|chr10 (112955869-112956117)
	37-304, gnl\|rheMac2\|chr11 (112390369-112390617)
	37-304, gnl\|rn3\|chr12 (35820478-35820618)