rplac_4231.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGGCAGAAGGGGACACCCAGCTCTGCCTCAAAAACCAAAGATAAGTGAACAAGAGAAAC GAGCGTGGGGAGACCCGCCTGCACCGGGCGGCCATCCGGGGGGACGCCCGGCGCATCAAG GAGCTCATCAGCGAGGGGGCGGACGTCAACGTCAAGGACTTCGCGGGCTGGACGGCGCTG CATGAGGCCTGTAACCGGGGTTACTACGACGTCGCAAAGCAGCTGCTGGCCGCGGGCGCG GAGGTGAACACCAAGGGGCTGGACGACGACACGCCCTTGCACGACGCTNCCAACAACGGG CACTACAAGGTGGTGAAGCTGCTGCTCCGGTACGGAGGGAACCCGCAGCAGAGCAACCGG AAAGGCGAGACGCCACTGAAGGTGGCCAGCTCCCCTACCATGGTGAACCTGCTGCTGGGC AAGGGCACCTACACGTCCAGCGAGGAGAGCTCGGCCGAGAGCTCCGAGGAGGAGGACGCC CCGTCGTTCGCGCCGTCCAGCTCGGTGGACGGCAACAACACGGACTCCGAGTTCGAGAAG GGCCTGAAGCACAAGGCCAAGAACCCCGAGCCCCAGAAAACCGCGACGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGGCAGAAGGGGACACCCAGCTCTGCCTCAAAAACCAAAGATAAGTGAACAAGAGAAAC GAGCGTGGGGAGACCCGCCTGCACCGGGCGGCCATCCGGGGGGACGCCCGGCGCATCAAG GAGCTCATCAGCGAGGGGGCGGACGTCAACGTCAAGGACTTCGCGGGCTGGACGGCGCTG CATGAGGCCTGTAACCGGGGTTACTACGACGTCGCAAAGCAGCTGCTGGCCGCGGGCGCG GAGGTGAACACCAAGGGGCTGGACGACGACACGCCCTTGCACGACGCTNCCAACAACGGG CACTACAAGGTGGTGAAGCTGCTGCTCCGGTACGGAGGGAACCCGCAGCAGAGCAACCGG AAAGGCGAGACGCCACTGAAGGTGGCCAGCTCCCCTACCATGGTGAACCTGCTGCTGGGC AAGGGCACCTACACGTCCAGCGAGGAGAGCTCGGCCGAGAGCTCCGAGGAGGAGGACGCC CCGTCGTTCGCGCCGTCCAGCTCGGTGGACGGCAACAACACGGACTCCGAGTTCGAGAAG GGCCTGAAGCACAAGGCCAAGAACCCCGAGCCCCAGAAAACCGCGACGC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 71 entry(ies) | More info |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
| 5-167, gnl|bosTau2|chr18 (12217501-12217664) | |
| 5-167, gnl|canFam2|chr5 (67209313-67209195) | |
| 5-167, gnl|canFam2|chr5 (67209109-67209308) | |
| 5-167, gnl|danRer3|chr7 (48828572-48828691) | |
| 5-167, gnl|danRer3|chr7 (48842785-48842586) | |
| 5-167, gnl|dasNov1|scaffold_286619 (547-352) | |
| 5-167, gnl|dasNov1|scaffold_37066 (7419-7538) | |
| 5-167, gnl|echTel1|scaffold_232836 (15537-15418) | |
| 5-167, gnl|echTel1|scaffold_232836 (15339-15536) | |
| 5-167, gnl|fr1|chrUn (95233498-95233379) | |
| 5-167, gnl|fr1|chrUn (95233295-95233494) | |
| 5-167, gnl|galGal2|chr11 (18878065-18877946) | |
| 5-167, gnl|galGal2|chr11 (18877861-18878064) | |
| 5-167, gnl|hg17|chr16 (87884533-87884652) | |
| 5-167, gnl|Hg17|chr16 (87884696-87884533) | |
| 5-167, gnl|hg17|chr3 (179994318-179994521) | |
| 5-167, gnl|loxAfr1|scaffold_93775 (7593-7712) | |
| 5-167, gnl|loxAfr1|scaffold_93775 (7791-7594) | |
| 5-167, gnl|mm7|chr8 (121541298-121541417) | |
| 5-167, gnl|mm7|chr8 (121541502-121541303) | |
| 5-167, gnl|Mm7|chr8 (121541461-121541298) | |
| 5-167, gnl|monDom2|scaffold_23 (7115082-7114963) | |
| 5-167, gnl|monDom2|scaffold_23 (7114878-7115080) | |
| 5-167, gnl|oryCun1|scaffold_176949 (454-265) | |
| 5-167, gnl|oryCun1|scaffold_193863 (9000-8881) | |
| 5-167, gnl|panTro1|chr18 (82894468-82894587) | |
| 5-167, gnl|panTro1|chr2 (183757165-183757368) | |
| 5-167, gnl|rheMac2|chr2 (108007474-108007271) | |
| 5-167, gnl|rheMac2|chr20 (87401355-87401474) | |
| 5-167, gnl|rn3|chr19 (53229899-53230018) | |
| 5-167, gnl|rn3|chr19 (53230103-53229908) | |
| 5-167, gnl|tetNig1|chr15_random (1733032-1732913) | |
| 5-167, gnl|tetNig1|chrUn_random (150889405-150889605) | |
| 5-167, gnl|xenTro1|scaffold_13 (2431684-2431803) | |
| 5-167, gnl|xenTro1|scaffold_13 (2431888-2431686) | |
| 303-455, gnl|bosTau2|chr18 (12220359-12220512) | |
| 303-455, gnl|canFam2|chr5 (67213105-67212922) | |
| 303-455, gnl|danRer3|chr7 (48827995-48828157) | |
| 303-455, gnl|dasNov1|scaffold_37066 (4684-4865) | |
| 303-455, gnl|echTel1|scaffold_302897 (10501-10688) | |
| 303-455, gnl|fr1|chrUn (95233977-95233808) | |
| 303-455, gnl|galGal2|chr11 (18879809-18879643) | |
| 303-455, gnl|hg17|chr16 (87879943-87880144) | |
| 303-455, gnl|Hg17|chr16 (87880103-87879950) | |
| 303-455, gnl|loxAfr1|scaffold_93775 (3977-4178) | |
| 303-455, gnl|mm7|chr8 (121538250-121538452) | |
| 303-455, gnl|Mm7|chr8 (121538410-121538257) | |
| 303-455, gnl|monDom2|scaffold_23 (7117369-7117178) | |
| 303-455, gnl|oryCun1|scaffold_195634 (5391-5196) | |
| 303-455, gnl|panTro1|chr18 (82889154-82889355) | |
| 303-455, gnl|rheMac2|chr20 (87397145-87397346) | |
| 303-455, gnl|rn3|chr19 (53226944-53227146) | |
| 303-455, gnl|xenTro1|scaffold_13 (2424771-2424970) | |
| 466-587, gnl|bosTau2|chr18 (12220815-12220936) | |
| 466-587, gnl|canFam2|chr5 (67213753-67213495) | |
| 466-587, gnl|danRer3|chr7 (48827666-48827901) | |
| 466-587, gnl|dasNov1|scaffold_37066 (4051-4309) | |
| 466-587, gnl|echTel1|scaffold_302897 (10037-10295) | |
| 466-587, gnl|fr1|chrUn (95234312-95234053) | |
| 466-587, gnl|galGal2|chr11 (18880561-18880286) | |
| 466-587, gnl|hg17|chr16 (87879325-87879583) | |
| 466-587, gnl|Hg17|chr16 (87879550-87879429) | |
| 466-587, gnl|mm7|chr8 (121537618-121537876) | |
| 466-587, gnl|Mm7|chr8 (121537843-121537722) | |
| 466-587, gnl|monDom2|scaffold_23 (7118121-7117863) | |
| 466-587, gnl|oryCun1|scaffold_195634 (5814-5546) | |
| 466-587, gnl|panTro1|chr18 (82888536-82888794) | |
| 466-587, gnl|rheMac2|chr20 (87396548-87396806) | |
| 466-587, gnl|rn3|chr19 (53226275-53226533) | |
| 466-587, gnl|tetNig1|chr15_random (1733939-1733716) | |
| 466-587, gnl|xenTro1|scaffold_13 (2422666-2422927) |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-167, gnl|bosTau2|chr18 (12217501-12217664) | |
| 5-167, gnl|canFam2|chr5 (67209313-67209195) | |
| 5-167, gnl|canFam2|chr5 (67209109-67209308) | |
| 5-167, gnl|danRer3|chr7 (48828572-48828691) | |
| 5-167, gnl|danRer3|chr7 (48842785-48842586) | |
| 5-167, gnl|dasNov1|scaffold_286619 (547-352) | |
| 5-167, gnl|dasNov1|scaffold_37066 (7419-7538) | |
| 5-167, gnl|echTel1|scaffold_232836 (15537-15418) | |
| 5-167, gnl|echTel1|scaffold_232836 (15339-15536) | |
| 5-167, gnl|fr1|chrUn (95233498-95233379) | |
| 5-167, gnl|fr1|chrUn (95233295-95233494) | |
| 5-167, gnl|galGal2|chr11 (18878065-18877946) | |
| 5-167, gnl|galGal2|chr11 (18877861-18878064) | |
| 5-167, gnl|hg17|chr16 (87884533-87884652) | |
| 5-167, gnl|Hg17|chr16 (87884696-87884533) | |
| 5-167, gnl|hg17|chr3 (179994318-179994521) | |
| 5-167, gnl|loxAfr1|scaffold_93775 (7593-7712) | |
| 5-167, gnl|loxAfr1|scaffold_93775 (7791-7594) | |
| 5-167, gnl|mm7|chr8 (121541298-121541417) | |
| 5-167, gnl|mm7|chr8 (121541502-121541303) | |
| 5-167, gnl|Mm7|chr8 (121541461-121541298) | |
| 5-167, gnl|monDom2|scaffold_23 (7115082-7114963) | |
| 5-167, gnl|monDom2|scaffold_23 (7114878-7115080) | |
| 5-167, gnl|oryCun1|scaffold_176949 (454-265) | |
| 5-167, gnl|oryCun1|scaffold_193863 (9000-8881) | |
| 5-167, gnl|panTro1|chr18 (82894468-82894587) | |
| 5-167, gnl|panTro1|chr2 (183757165-183757368) | |
| 5-167, gnl|rheMac2|chr2 (108007474-108007271) | |
| 5-167, gnl|rheMac2|chr20 (87401355-87401474) | |
| 5-167, gnl|rn3|chr19 (53229899-53230018) | |
| 5-167, gnl|rn3|chr19 (53230103-53229908) | |
| 5-167, gnl|tetNig1|chr15_random (1733032-1732913) | |
| 5-167, gnl|tetNig1|chrUn_random (150889405-150889605) | |
| 5-167, gnl|xenTro1|scaffold_13 (2431684-2431803) | |
| 5-167, gnl|xenTro1|scaffold_13 (2431888-2431686) | |
| 303-455, gnl|bosTau2|chr18 (12220359-12220512) | |
| 303-455, gnl|canFam2|chr5 (67213105-67212922) | |
| 303-455, gnl|danRer3|chr7 (48827995-48828157) | |
| 303-455, gnl|dasNov1|scaffold_37066 (4684-4865) | |
| 303-455, gnl|echTel1|scaffold_302897 (10501-10688) | |
| 303-455, gnl|fr1|chrUn (95233977-95233808) | |
| 303-455, gnl|galGal2|chr11 (18879809-18879643) | |
| 303-455, gnl|hg17|chr16 (87879943-87880144) | |
| 303-455, gnl|Hg17|chr16 (87880103-87879950) | |
| 303-455, gnl|loxAfr1|scaffold_93775 (3977-4178) | |
| 303-455, gnl|mm7|chr8 (121538250-121538452) | |
| 303-455, gnl|Mm7|chr8 (121538410-121538257) | |
| 303-455, gnl|monDom2|scaffold_23 (7117369-7117178) | |
| 303-455, gnl|oryCun1|scaffold_195634 (5391-5196) | |
| 303-455, gnl|panTro1|chr18 (82889154-82889355) | |
| 303-455, gnl|rheMac2|chr20 (87397145-87397346) | |
| 303-455, gnl|rn3|chr19 (53226944-53227146) | |
| 303-455, gnl|xenTro1|scaffold_13 (2424771-2424970) | |
| 466-587, gnl|bosTau2|chr18 (12220815-12220936) | |
| 466-587, gnl|canFam2|chr5 (67213753-67213495) | |
| 466-587, gnl|danRer3|chr7 (48827666-48827901) | |
| 466-587, gnl|dasNov1|scaffold_37066 (4051-4309) | |
| 466-587, gnl|echTel1|scaffold_302897 (10037-10295) | |
| 466-587, gnl|fr1|chrUn (95234312-95234053) | |
| 466-587, gnl|galGal2|chr11 (18880561-18880286) | |
| 466-587, gnl|hg17|chr16 (87879325-87879583) | |
| 466-587, gnl|Hg17|chr16 (87879550-87879429) | |
| 466-587, gnl|mm7|chr8 (121537618-121537876) | |
| 466-587, gnl|Mm7|chr8 (121537843-121537722) | |
| 466-587, gnl|monDom2|scaffold_23 (7118121-7117863) | |
| 466-587, gnl|oryCun1|scaffold_195634 (5814-5546) | |
| 466-587, gnl|panTro1|chr18 (82888536-82888794) | |
| 466-587, gnl|rheMac2|chr20 (87396548-87396806) | |
| 466-587, gnl|rn3|chr19 (53226275-53226533) | |
| 466-587, gnl|tetNig1|chr15_random (1733939-1733716) | |
| 466-587, gnl|xenTro1|scaffold_13 (2422666-2422927) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |