Non-Coding RNA Search

rplac_4390.y1

Sequence:


               
               AGGCGGGTGCGCGGCGGAGGGCCGCACGGGGGCCGCGGGCCGCAGGCGGGCGGGCAGGCT
CATGCGGAGCTCCTTGCGCTGGAAGGACGTCTCCCGGAGCACTCGCCGCTGCGCGCCCTG
CAGCCGCTGACGATGAGGACACCGAGGTTCTGAGGGAGAAATGATTTGCCCAGAGGCACA
CAGCTGGGCTCAGCTTAGAGGTCTCCTGACCTTTCGGGTTCCCAGCGGTTCCTGAGCTTC
CCCCATCACAGCAGTCAACCCTACATTGATTGGCGGCCGTGTACTAGTGATTCAGTCTCC
CCATATCCACCCCTGAGCTTCCTGAGGACAGGCCCTGCGCTTACACATCTCTGTACCGTC
AGTGCCTGGCAGAGCAGTTTCTATGACTTCAGAAAGACAAGAAGCCACCCTGAGGAGCAG
CCCCTGGAGGACTGTCACCTACTCTAGGGCTGTACCAGTGGCATAGGAGCTATGGCTACT
GGCCTACACCACAGGCATGCTGGATTGGAGCCATGTCTGTGACCTACATCATAGATCACG
GGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCGGGTGCGCGGCGGAGGGCCGCACGGGGGCCGCGGGCCGCAGGCGGGCGGGCAGGCT
CATGCGGAGCTCCTTGCGCTGGAAGGACGTCTCCCGGAGCACTCGCCGCTGCGCGCCCTG
CAGCCGCTGACGATGAGGACACCGAGGTTCTGAGGGAGAAATGATTTGCCCAGAGGCACA
CAGCTGGGCTCAGCTTAGAGGTCTCCTGACCTTTCGGGTTCCCAGCGGTTCCTGAGCTTC
CCCCATCACAGCAGTCAACCCTACATTGATTGGCGGCCGTGTACTAGTGATTCAGTCTCC
CCATATCCACCCCTGAGCTTCCTGAGGACAGGCCCTGCGCTTACACATCTCTGTACCGTC
AGTGCCTGGCAGAGCAGTTTCTATGACTTCAGAAAGACAAGAAGCCACCCTGAGGAGCAG
CCCCTGGAGGACTGTCACCTACTCTAGGGCTGTACCAGTGGCATAGGAGCTATGGCTACT
GGCCTACACCACAGGCATGCTGGATTGGAGCCATGTCTGTGACCTACATCATAGATCACG
GGGCC

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               3-132, gnl|bosTau2|chr7 (28463484-28463613)
               

               
               3-132, gnl|Hg17|chr5 (132189179-132189308)
               

               
               3-132, gnl|Mm7|chr11 (53420564-53420435)
               


               
               188-386, gnl|bosTau2|chr7 (28464956-28465153)
               

               
               188-386, gnl|canFam2|chr11 (24125574-24125799)
               

               
               188-386, gnl|echTel1|scaffold_295905 (2555-2784)
               

               
               188-386, gnl|hg17|chr5 (132190611-132190835)
               

               
               188-386, gnl|Hg17|chr5 (132190720-132190917)
               

               
               188-386, gnl|mm7|chr11 (53419154-53418962)
               

               
               188-386, gnl|Mm7|chr11 (53419057-53418880)
               

               
               188-386, gnl|oryCun1|scaffold_193270 (10030-9892)
               

               
               188-386, gnl|panTro1|chr4 (138528407-138528631)
               

               
               188-386, gnl|rheMac2|chr6 (129234088-129234312)
               

               
               188-386, gnl|rn3|chr10 (38936320-38936130)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-132, gnl|bosTau2|chr7 (28463484-28463613)
               

               
               3-132, gnl|Hg17|chr5 (132189179-132189308)
               

               
               3-132, gnl|Mm7|chr11 (53420564-53420435)
               


               
               188-386, gnl|bosTau2|chr7 (28464956-28465153)
               

               
               188-386, gnl|canFam2|chr11 (24125574-24125799)
               

               
               188-386, gnl|echTel1|scaffold_295905 (2555-2784)
               

               
               188-386, gnl|hg17|chr5 (132190611-132190835)
               

               
               188-386, gnl|Hg17|chr5 (132190720-132190917)
               

               
               188-386, gnl|mm7|chr11 (53419154-53418962)
               

               
               188-386, gnl|Mm7|chr11 (53419057-53418880)
               

               
               188-386, gnl|oryCun1|scaffold_193270 (10030-9892)
               

               
               188-386, gnl|panTro1|chr4 (138528407-138528631)
               

               
               188-386, gnl|rheMac2|chr6 (129234088-129234312)
               

               
               188-386, gnl|rn3|chr10 (38936320-38936130)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               pla (0.133672)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	3-132, gnl\|bosTau2\|chr7 (28463484-28463613)
	3-132, gnl\|Hg17\|chr5 (132189179-132189308)
	3-132, gnl\|Mm7\|chr11 (53420564-53420435)

	188-386, gnl\|bosTau2\|chr7 (28464956-28465153)
	188-386, gnl\|canFam2\|chr11 (24125574-24125799)
	188-386, gnl\|echTel1\|scaffold_295905 (2555-2784)
	188-386, gnl\|hg17\|chr5 (132190611-132190835)
	188-386, gnl\|Hg17\|chr5 (132190720-132190917)
	188-386, gnl\|mm7\|chr11 (53419154-53418962)
	188-386, gnl\|Mm7\|chr11 (53419057-53418880)
	188-386, gnl\|oryCun1\|scaffold_193270 (10030-9892)
	188-386, gnl\|panTro1\|chr4 (138528407-138528631)
	188-386, gnl\|rheMac2\|chr6 (129234088-129234312)
	188-386, gnl\|rn3\|chr10 (38936320-38936130)