rplac_4634.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGGGGTTCGGTCATGGCTCACAGACCGCAGAGGACTTTTCGGCAGCGCCGAACTGACTC TAGCGACAGCGACAGCGGCCAGGAACCAACTGCCGAACCAGGGGTGCCCGGGGCGGGGGC CGGGGCCGGGGCCGGGTCTGGGCGAGTTCCCGGCGCGCGGCGAAAGCGGCTCCGCGCTTG GACCCAGGATCGGATGCCCCAGAATCCAGAACAGTTGATCTTTCAACAGACAGAGAGGAT GGAATACATCATTCTTCAGAAAGCAAAGATGATCAGAGTTCATCTTCCAACAGCTCTAGC TCTCTGGAAGAAGAAGAAGAATTTTTATCAACAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGGGGTTCGGTCATGGCTCACAGACCGCAGAGGACTTTTCGGCAGCGCCGAACTGACTC TAGCGACAGCGACAGCGGCCAGGAACCAACTGCCGAACCAGGGGTGCCCGGGGCGGGGGC CGGGGCCGGGGCCGGGTCTGGGCGAGTTCCCGGCGCGCGGCGAAAGCGGCTCCGCGCTTG GACCCAGGATCGGATGCCCCAGAATCCAGAACAGTTGATCTTTCAACAGACAGAGAGGAT GGAATACATCATTCTTCAGAAAGCAAAGATGATCAGAGTTCATCTTCCAACAGCTCTAGC TCTCTGGAAGAAGAAGAAGAATTTTTATCAACAG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 200-312, - strand, RNAz p=0.747569 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 200-312, - strand, RNAz p=0.747569 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 8-133, gnl|bosTau2|chr11 (30219051-30218928) | |
| 8-133, gnl|canFam2|chr17 (50699429-50699146) | |
| 8-133, gnl|dasNov1|scaffold_89538 (5157-5426) | |
| 8-133, gnl|echTel1|scaffold_280155 (85722-85490) | |
| 8-133, gnl|hg17|chr2 (75849361-75849638) | |
| 8-133, gnl|Hg17|chr2 (75849642-75849519) | |
| 8-133, gnl|loxAfr1|scaffold_59868 (2143-2390) | |
| 8-133, gnl|mm7|chr6 (81942363-81942119) | |
| 8-133, gnl|oryCun1|scaffold_212056 (15084-14801) | |
| 8-133, gnl|panTro1|chr12_random (27613692-27613415) | |
| 8-133, gnl|rheMac2|chr13 (76022294-76022568) | |
| 8-133, gnl|rn3|chr4 (116412117-116411867) | |
| 200-314, gnl|bosTau2|chr11 (30214291-30214177) | |
| 200-314, gnl|canFam2|chr17 (50703196-50703008) | |
| 200-314, gnl|dasNov1|scaffold_89538 (1182-1376) | |
| 200-314, gnl|echTel1|scaffold_280155 (92843-92650) | |
| 200-314, gnl|hg17|chr2 (75845267-75845461) | |
| 200-314, gnl|Hg17|chr2 (75845435-75845318) | |
| 200-314, gnl|loxAfr1|scaffold_62793 (2585-2779) | |
| 200-314, gnl|mm7|chr6 (81944345-81944155) | |
| 200-314, gnl|Mm7|chr6 (81944175-81944292) | |
| 200-314, gnl|panTro1|chr12_random (27617758-27617564) | |
| 200-314, gnl|rheMac2|chr13 (76017918-76018111) | |
| 200-314, gnl|rn3|chr4 (116414265-116414090) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 8-133, gnl|bosTau2|chr11 (30219051-30218928) | |
| 8-133, gnl|canFam2|chr17 (50699429-50699146) | |
| 8-133, gnl|dasNov1|scaffold_89538 (5157-5426) | |
| 8-133, gnl|echTel1|scaffold_280155 (85722-85490) | |
| 8-133, gnl|hg17|chr2 (75849361-75849638) | |
| 8-133, gnl|Hg17|chr2 (75849642-75849519) | |
| 8-133, gnl|loxAfr1|scaffold_59868 (2143-2390) | |
| 8-133, gnl|mm7|chr6 (81942363-81942119) | |
| 8-133, gnl|oryCun1|scaffold_212056 (15084-14801) | |
| 8-133, gnl|panTro1|chr12_random (27613692-27613415) | |
| 8-133, gnl|rheMac2|chr13 (76022294-76022568) | |
| 8-133, gnl|rn3|chr4 (116412117-116411867) | |
| 200-314, gnl|bosTau2|chr11 (30214291-30214177) | |
| 200-314, gnl|canFam2|chr17 (50703196-50703008) | |
| 200-314, gnl|dasNov1|scaffold_89538 (1182-1376) | |
| 200-314, gnl|echTel1|scaffold_280155 (92843-92650) | |
| 200-314, gnl|hg17|chr2 (75845267-75845461) | |
| 200-314, gnl|Hg17|chr2 (75845435-75845318) | |
| 200-314, gnl|loxAfr1|scaffold_62793 (2585-2779) | |
| 200-314, gnl|mm7|chr6 (81944345-81944155) | |
| 200-314, gnl|Mm7|chr6 (81944175-81944292) | |
| 200-314, gnl|panTro1|chr12_random (27617758-27617564) | |
| 200-314, gnl|rheMac2|chr13 (76017918-76018111) | |
| 200-314, gnl|rn3|chr4 (116414265-116414090) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |