Non-Coding RNA Search

rplac_5424.y1

Sequence:


               
               TTATTCTTAACAGTAATTTTGCCTTATACATAAATTATGATACTACTAGGTACTCCAAGA
ACTGGAGAGGTTAAGAAGCATTATCGAAACCATATTTAATACTTCCACAGGACACTAGCA
ACATCGCAAACCACCAATACCTGGAATTGCATTACATTATTAAGTAGCTGGCTGCAGTAT
CAAAGGCCTTAGTGTCCGGAGACAGGAGCTGCCTCTGGAAAAACCTATATTGTGCATATT
CCTATCATCAGTCTCTACCATCAAACTGAAGAGGTGAACGGTACAACAATTTAATGCCAT
CGAATTCCTAACAGAACCTCCTCTCTAGGAAACCAGTTTTTATTAGTGGAAGCTAAGACT
GCACACAGCAAAACAAATCCAGTTCCTGCTTCTGCAGTGTCTCATTTTGCTTTGTAATGA
CAACCACAATCCCCCCTCCAACATCTATTTAATGAATTTGAATAATTTACTACTCAGATC
ATTTAAAACAATCCCTCAATTTGGTGGGCAAATACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATTCTTAACAGTAATTTTGCCTTATACATAAATTATGATACTACTAGGTACTCCAAGA
ACTGGAGAGGTTAAGAAGCATTATCGAAACCATATTTAATACTTCCACAGGACACTAGCA
ACATCGCAAACCACCAATACCTGGAATTGCATTACATTATTAAGTAGCTGGCTGCAGTAT
CAAAGGCCTTAGTGTCCGGAGACAGGAGCTGCCTCTGGAAAAACCTATATTGTGCATATT
CCTATCATCAGTCTCTACCATCAAACTGAAGAGGTGAACGGTACAACAATTTAATGCCAT
CGAATTCCTAACAGAACCTCCTCTCTAGGAAACCAGTTTTTATTAGTGGAAGCTAAGACT
GCACACAGCAAAACAAATCCAGTTCCTGCTTCTGCAGTGTCTCATTTTGCTTTGTAATGA
CAACCACAATCCCCCCTCCAACATCTATTTAATGAATTTGAATAATTTACTACTCAGATC
ATTTAAAACAATCCCTCAATTTGGTGGGCAAATACT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               164-274, - strand, RNAz p=0.684312

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               164-274, - strand, RNAz p=0.684312

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               10-515, gnl|bosTau2|chr26 (30231078-30230568)
               

               
               10-515, gnl|canFam2|chr28 (37109013-37109753)
               

               
               10-515, gnl|dasNov1|scaffold_136354 (3362-2633)
               

               
               10-515, gnl|echTel1|scaffold_252025 (3893-3248)
               

               
               10-515, gnl|hg17|chr10 (126481010-126481732)
               

               
               10-515, gnl|Hg17|chr10 (126481746-126481258)
               

               
               10-515, gnl|loxAfr1|scaffold_9687 (13855-14611)
               

               
               10-515, gnl|mm7|chr7 (129264729-129265414)
               

               
               10-515, gnl|Mm7|chr7 (129265434-129264953)
               

               
               10-515, gnl|oryCun1|scaffold_174486 (10485-11216)
               

               
               10-515, gnl|panTro1|chr8 (128989364-128990093)
               

               
               10-515, gnl|rheMac2|chr9 (124403865-124404591)
               

               
               10-515, gnl|rn3|chr1 (192477615-192478312)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-515, gnl|bosTau2|chr26 (30231078-30230568)
               

               
               10-515, gnl|canFam2|chr28 (37109013-37109753)
               

               
               10-515, gnl|dasNov1|scaffold_136354 (3362-2633)
               

               
               10-515, gnl|echTel1|scaffold_252025 (3893-3248)
               

               
               10-515, gnl|hg17|chr10 (126481010-126481732)
               

               
               10-515, gnl|Hg17|chr10 (126481746-126481258)
               

               
               10-515, gnl|loxAfr1|scaffold_9687 (13855-14611)
               

               
               10-515, gnl|mm7|chr7 (129264729-129265414)
               

               
               10-515, gnl|Mm7|chr7 (129265434-129264953)
               

               
               10-515, gnl|oryCun1|scaffold_174486 (10485-11216)
               

               
               10-515, gnl|panTro1|chr8 (128989364-128990093)
               

               
               10-515, gnl|rheMac2|chr9 (124403865-124404591)
               

               
               10-515, gnl|rn3|chr1 (192477615-192478312)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	10-515, gnl\|bosTau2\|chr26 (30231078-30230568)
	10-515, gnl\|canFam2\|chr28 (37109013-37109753)
	10-515, gnl\|dasNov1\|scaffold_136354 (3362-2633)
	10-515, gnl\|echTel1\|scaffold_252025 (3893-3248)
	10-515, gnl\|hg17\|chr10 (126481010-126481732)
	10-515, gnl\|Hg17\|chr10 (126481746-126481258)
	10-515, gnl\|loxAfr1\|scaffold_9687 (13855-14611)
	10-515, gnl\|mm7\|chr7 (129264729-129265414)
	10-515, gnl\|Mm7\|chr7 (129265434-129264953)
	10-515, gnl\|oryCun1\|scaffold_174486 (10485-11216)
	10-515, gnl\|panTro1\|chr8 (128989364-128990093)
	10-515, gnl\|rheMac2\|chr9 (124403865-124404591)
	10-515, gnl\|rn3\|chr1 (192477615-192478312)