Non-Coding RNA Search

rplac_5434.y1

Sequence:


               
               TCCCCTCAGCCAGCCTCCTCCTCTGCTTGGGGACTGCAAAGGCATGGGATAGACCTAGAG
CCACTTCTGTCTCCCCTCCAGCCCTCGATCAATCTCCTCCCTTTAAATTAAAGTCTGTTC
CTCGCTCCTCGTCGTTTTAGAGATTTGTCAGTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCCTCAGCCAGCCTCCTCCTCTGCTTGGGGACTGCAAAGGCATGGGATAGACCTAGAG
CCACTTCTGTCTCCCCTCCAGCCCTCGATCAATCTCCTCCCTTTAAATTAAAGTCTGTTC
CTCGCTCCTCGTCGTTTTAGAGATTTGTCAGTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               32-135, - strand, RNAz p=0.563358

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               32-135, - strand, RNAz p=0.563358

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-153, gnl|bosTau2|chr11 (41386612-41386460)
               

               
               1-153, gnl|canFam2|chr10 (67465818-67466373)
               

               
               1-153, gnl|dasNov1|scaffold_5101 (35778-35264)
               

               
               1-153, gnl|echTel1|scaffold_322528 (32604-32146)
               

               
               1-153, gnl|hg17|chr2 (64889191-64889744)
               

               
               1-153, gnl|Hg17|chr2 (64889514-64889357)
               

               
               1-153, gnl|mm7|chr11 (20495668-20495222)
               

               
               1-153, gnl|Mm7|chr11 (20495411-20495546)
               

               
               1-153, gnl|monDom2|scaffold_1 (30286471-30287131)
               

               
               1-153, gnl|oryCun1|scaffold_198994 (109800-110313)
               

               
               1-153, gnl|panTro1|chr12 (67121895-67122448)
               

               
               1-153, gnl|rheMac2|chr13 (64965303-64965862)
               

               
               1-153, gnl|rn3|chr14 (101357377-101356930)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-153, gnl|bosTau2|chr11 (41386612-41386460)
               

               
               1-153, gnl|canFam2|chr10 (67465818-67466373)
               

               
               1-153, gnl|dasNov1|scaffold_5101 (35778-35264)
               

               
               1-153, gnl|echTel1|scaffold_322528 (32604-32146)
               

               
               1-153, gnl|hg17|chr2 (64889191-64889744)
               

               
               1-153, gnl|Hg17|chr2 (64889514-64889357)
               

               
               1-153, gnl|mm7|chr11 (20495668-20495222)
               

               
               1-153, gnl|Mm7|chr11 (20495411-20495546)
               

               
               1-153, gnl|monDom2|scaffold_1 (30286471-30287131)
               

               
               1-153, gnl|oryCun1|scaffold_198994 (109800-110313)
               

               
               1-153, gnl|panTro1|chr12 (67121895-67122448)
               

               
               1-153, gnl|rheMac2|chr13 (64965303-64965862)
               

               
               1-153, gnl|rn3|chr14 (101357377-101356930)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	1-153, gnl\|bosTau2\|chr11 (41386612-41386460)
	1-153, gnl\|canFam2\|chr10 (67465818-67466373)
	1-153, gnl\|dasNov1\|scaffold_5101 (35778-35264)
	1-153, gnl\|echTel1\|scaffold_322528 (32604-32146)
	1-153, gnl\|hg17\|chr2 (64889191-64889744)
	1-153, gnl\|Hg17\|chr2 (64889514-64889357)
	1-153, gnl\|mm7\|chr11 (20495668-20495222)
	1-153, gnl\|Mm7\|chr11 (20495411-20495546)
	1-153, gnl\|monDom2\|scaffold_1 (30286471-30287131)
	1-153, gnl\|oryCun1\|scaffold_198994 (109800-110313)
	1-153, gnl\|panTro1\|chr12 (67121895-67122448)
	1-153, gnl\|rheMac2\|chr13 (64965303-64965862)
	1-153, gnl\|rn3\|chr14 (101357377-101356930)