Non-Coding RNA Search

rplac_5937.y1

Sequence:


               
               ACAAACCACTTGCCAATACGTACAAAGTTCCGGTTCATTAAACACCGTTCCAACAGATGT
GAACTGCTTTGAAAAGCAAAGTACGGCATTCGTAGGAAAGTCCATTCTCCCACACTCCAT
CTTCCTCTTCTGACAAGTCATGGTGAATAAGGTCAGCAAAATTGGGGTCTTCACCCCACC
AAAATATCCACAATTCTCTTCTTCCAGGTCTTTGATCTCGCCGCCAAACACCAAGCACAT
CTGCCTTAAAGCAGCGACTAAAACTGCTCAAAATGGGGTCTTCCTCTGTCACCGGAAACA
GAATAGGGGCAGAAGTTGGGCCTTGCCATACATATCTTTTCCACTTAATTCCCGTCAAGT
CAGCCAGGCAGAAGAGGTTACAGTGACAATCTTCCAGGCTGGCCCCGTTCGGCACGAAGG
AGGAACTCATCGTCCCTCACAGCAGCCGTCGCCGGCGCCACAACCCACCATCCGCCATTA
CCGCCGCCTCCGACCAGAGAGAGAAACACAGACACCGGGGAGGGCGGGGGGGTGGTGGTT
GGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAAACCACTTGCCAATACGTACAAAGTTCCGGTTCATTAAACACCGTTCCAACAGATGT
GAACTGCTTTGAAAAGCAAAGTACGGCATTCGTAGGAAAGTCCATTCTCCCACACTCCAT
CTTCCTCTTCTGACAAGTCATGGTGAATAAGGTCAGCAAAATTGGGGTCTTCACCCCACC
AAAATATCCACAATTCTCTTCTTCCAGGTCTTTGATCTCGCCGCCAAACACCAAGCACAT
CTGCCTTAAAGCAGCGACTAAAACTGCTCAAAATGGGGTCTTCCTCTGTCACCGGAAACA
GAATAGGGGCAGAAGTTGGGCCTTGCCATACATATCTTTTCCACTTAATTCCCGTCAAGT
CAGCCAGGCAGAAGAGGTTACAGTGACAATCTTCCAGGCTGGCCCCGTTCGGCACGAAGG
AGGAACTCATCGTCCCTCACAGCAGCCGTCGCCGGCGCCACAACCCACCATCCGCCATTA
CCGCCGCCTCCGACCAGAGAGAGAAACACAGACACCGGGGAGGGCGGGGGGGTGGTGGTT
GGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51828623|ref|XP_484059.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51828623|ref|XP_484059.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               169-288, - strand, RNAz p=0.947461

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               169-288, - strand, RNAz p=0.947461

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               130-375, gnl|bosTau2|chr19 (5362926-5362680)
               

               
               130-375, gnl|Hg17|chr17 (57495210-57495456)
               

               
               130-375, gnl|Mm7|chr11 (86425182-86425429)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               130-375, gnl|bosTau2|chr19 (5362926-5362680)
               

               
               130-375, gnl|Hg17|chr17 (57495210-57495456)
               

               
               130-375, gnl|Mm7|chr11 (86425182-86425429)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	130-375, gnl\|bosTau2\|chr19 (5362926-5362680)
	130-375, gnl\|Hg17\|chr17 (57495210-57495456)
	130-375, gnl\|Mm7\|chr11 (86425182-86425429)