Non-Coding RNA Search

rplac_5938.y1

Sequence:


               
               TACACGTAATTGGTGGCAGCAGGCAAAGCTGCTTCAAGGGGAGGGGTTGCCAATGGAATG
AAGGAAGGAGGGAGTCCTAGAGTGACAGGGCTGGAAGGGACCTCAGAGATCATCAAATCC
AACCTTTCGTGGCCTACACACCATTCCCAGGACCTATGTGCTCCCATTCCAACCGTCAAT
TCTCATGCCAAGCAGGGGTTCTCCAGGCCTCCTCCCCCAGCCTTCCCAAGGGCACTCTTC
TTCCTACCACTGAGCTAATCCACCCTCTTGTTTTCTAGATGAGGTCACTGAGGCCCACTG
AGCTGTGATTTGCCCAAAGGTAATCTTCATCCCAGGACAGAGGCAGGACAAGCACCTCAA
ATGCCTGAGTCTGTTTGCAGCCTCCTCCTTTTCCAGTCAGTCTCCAGGGAAGGAAAGTCT
CAGGGTTTCTCCTGGGGGTTAAGGAATCCTCTGACAAAGCCCACCTGTCACCCCAGCTAA
TGTGGGCTGCCAGCATCGATGGGCCTAAGAACTGAGTTATTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACACGTAATTGGTGGCAGCAGGCAAAGCTGCTTCAAGGGGAGGGGTTGCCAATGGAATG
AAGGAAGGAGGGAGTCCTAGAGTGACAGGGCTGGAAGGGACCTCAGAGATCATCAAATCC
AACCTTTCGTGGCCTACACACCATTCCCAGGACCTATGTGCTCCCATTCCAACCGTCAAT
TCTCATGCCAAGCAGGGGTTCTCCAGGCCTCCTCCCCCAGCCTTCCCAAGGGCACTCTTC
TTCCTACCACTGAGCTAATCCACCCTCTTGTTTTCTAGATGAGGTCACTGAGGCCCACTG
AGCTGTGATTTGCCCAAAGGTAATCTTCATCCCAGGACAGAGGCAGGACAAGCACCTCAA
ATGCCTGAGTCTGTTTGCAGCCTCCTCCTTTTCCAGTCAGTCTCCAGGGAAGGAAAGTCT
CAGGGTTTCTCCTGGGGGTTAAGGAATCCTCTGACAAAGCCCACCTGTCACCCCAGCTAA
TGTGGGCTGCCAGCATCGATGGGCCTAAGAACTGAGTTATTTTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               400-489, - strand, RNAz p=0.60518

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               400-489, - strand, RNAz p=0.60518

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-524, gnl|bosTau2|chr23 (9329813-9330318)
               

               
               1-524, gnl|canFam2|chr12 (7383524-7384148)
               

               
               1-524, gnl|echTel1|scaffold_311611 (43711-44251)
               

               
               1-524, gnl|hg17|chr6 (35287888-35288486)
               

               
               1-524, gnl|Hg17|chr6 (35287887-35288387)
               

               
               1-524, gnl|loxAfr1|scaffold_1466 (16378-16967)
               

               
               1-524, gnl|mm7|chr17 (26326224-26326821)
               

               
               1-524, gnl|Mm7|chr17 (26326223-26326745)
               

               
               1-524, gnl|monDom2|scaffold_42 (11859182-11858556)
               

               
               1-524, gnl|oryCun1|scaffold_212589 (158328-157735)
               

               
               1-524, gnl|panTro1|chr5 (35744498-35745096)
               

               
               1-524, gnl|rheMac2|chr4 (34931534-34932129)
               

               
               1-524, gnl|rn3|chr20 (6375473-6376082)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-524, gnl|bosTau2|chr23 (9329813-9330318)
               

               
               1-524, gnl|canFam2|chr12 (7383524-7384148)
               

               
               1-524, gnl|echTel1|scaffold_311611 (43711-44251)
               

               
               1-524, gnl|hg17|chr6 (35287888-35288486)
               

               
               1-524, gnl|Hg17|chr6 (35287887-35288387)
               

               
               1-524, gnl|loxAfr1|scaffold_1466 (16378-16967)
               

               
               1-524, gnl|mm7|chr17 (26326224-26326821)
               

               
               1-524, gnl|Mm7|chr17 (26326223-26326745)
               

               
               1-524, gnl|monDom2|scaffold_42 (11859182-11858556)
               

               
               1-524, gnl|oryCun1|scaffold_212589 (158328-157735)
               

               
               1-524, gnl|panTro1|chr5 (35744498-35745096)
               

               
               1-524, gnl|rheMac2|chr4 (34931534-34932129)
               

               
               1-524, gnl|rn3|chr20 (6375473-6376082)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	1-524, gnl\|bosTau2\|chr23 (9329813-9330318)
	1-524, gnl\|canFam2\|chr12 (7383524-7384148)
	1-524, gnl\|echTel1\|scaffold_311611 (43711-44251)
	1-524, gnl\|hg17\|chr6 (35287888-35288486)
	1-524, gnl\|Hg17\|chr6 (35287887-35288387)
	1-524, gnl\|loxAfr1\|scaffold_1466 (16378-16967)
	1-524, gnl\|mm7\|chr17 (26326224-26326821)
	1-524, gnl\|Mm7\|chr17 (26326223-26326745)
	1-524, gnl\|monDom2\|scaffold_42 (11859182-11858556)
	1-524, gnl\|oryCun1\|scaffold_212589 (158328-157735)
	1-524, gnl\|panTro1\|chr5 (35744498-35745096)
	1-524, gnl\|rheMac2\|chr4 (34931534-34932129)
	1-524, gnl\|rn3\|chr20 (6375473-6376082)