Non-Coding RNA Search

rplac_6419.y1

Sequence:


               
               TTAGAGGGGGAGTATTTGATGGAGGACTTTTGATGGGAGGACGCTGGATATCCTAATCTG
GTCCATTTGCATACTGTAAGGAAAAAACTTGCAACTTTTAAACCTGTTAAAATTAGTTGG
AATTATAAAATGTAATCTGCTATTATGACCCCTTGTCCAACCTGTGACCTTGAATGCTGG
GACCATCCAGCATTACATACTGGTACGACTTTTTTTTTTGCATGGAAGGGTTTCCTCAGA
CTCTAACCTGCACTCTGAATGGCCATGCAGGGAATCTTCCTGATCTTTCCAGAAGAGGCG
ATGGTGGGGTTGAACAAAGCCAAACCATTAGCTCCGCTGCTGCTTTTTTTCCCAGCCTAG
TTTTCTGGGCTGGGAGAGGATATAACGTGGACCTCTGGGACCTGGCATTTTGTTACGTAG
CTGAGACTTAGCAGGGCATACCCCGGCGAGGTTGTGCAGAGCTGGGATCCAAGTTCTCTG
TTTCTTAATCCTGAGCCCCGACTCCGATTTGCTCTGTGGTCCTGGGCATGTTCTCAAGAG
ACTTATTGCCTTCCTGAGACTCCTGATGATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAGAGGGGGAGTATTTGATGGAGGACTTTTGATGGGAGGACGCTGGATATCCTAATCTG
GTCCATTTGCATACTGTAAGGAAAAAACTTGCAACTTTTAAACCTGTTAAAATTAGTTGG
AATTATAAAATGTAATCTGCTATTATGACCCCTTGTCCAACCTGTGACCTTGAATGCTGG
GACCATCCAGCATTACATACTGGTACGACTTTTTTTTTTGCATGGAAGGGTTTCCTCAGA
CTCTAACCTGCACTCTGAATGGCCATGCAGGGAATCTTCCTGATCTTTCCAGAAGAGGCG
ATGGTGGGGTTGAACAAAGCCAAACCATTAGCTCCGCTGCTGCTTTTTTTCCCAGCCTAG
TTTTCTGGGCTGGGAGAGGATATAACGTGGACCTCTGGGACCTGGCATTTTGTTACGTAG
CTGAGACTTAGCAGGGCATACCCCGGCGAGGTTGTGCAGAGCTGGGATCCAAGTTCTCTG
TTTCTTAATCCTGAGCCCCGACTCCGATTTGCTCTGTGGTCCTGGGCATGTTCTCAAGAG
ACTTATTGCCTTCCTGAGACTCCTGATGATCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               274-428, + strand, RNAz p=0.996498

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               274-428, + strand, RNAz p=0.996498

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               5-572, gnl|bosTau2|chr14 (1721105-1720536)
               

               
               5-572, gnl|Hg17|chr2 (223744073-223744617)
               

               
               5-572, gnl|Mm7|chr1 (79035535-79036075)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-572, gnl|bosTau2|chr14 (1721105-1720536)
               

               
               5-572, gnl|Hg17|chr2 (223744073-223744617)
               

               
               5-572, gnl|Mm7|chr1 (79035535-79036075)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               pla (0.133672)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	5-572, gnl\|bosTau2\|chr14 (1721105-1720536)
	5-572, gnl\|Hg17\|chr2 (223744073-223744617)
	5-572, gnl\|Mm7\|chr1 (79035535-79036075)