Non-Coding RNA Search

rplac_6426.y1

Sequence:


               
               AATGATCTCAATCCTGAATCCCATAAATGGCTACTGCACAACTGTAAATTAAATAAAGTG
GACCAAAAGGTGAAAGTCTTTAACTTGGGATGGGAAAGACTTCCTCCAAGGACCCGTCAG
AGAAGAGTTAATGCAGCAACTGGGATTACTGTCAAAAGAAAGAAAACACTCTGTGCACAT
TGTCATGAACTTGCCAGCAAAGGCAGTTGAGTTTCTCTGTGCTTTCAAATCACTCTTAGA
TGGACAGCCATGCAGCAGTGAGCTCCTTCCCATAGTGCACTGTTACAGCTTTTCCAAAGA
TGCTAATCCTGCTAAGGATGTTCAGCAACAAGCTGGAACTGTGTTAGGTGTTTCCTTGGA
GGCATGCAGTTCAGTTCACCTAGTAAGAAATGTGGCCCCCAACAAGGAAATGTTATGCAT
CACCTTTCAGATTCCTGCTGCTGTACTCTACAAGAATCAGACCGAAAATCAAGAGACTCA
TGATGATCCACCTCTTAAACGCCAGAGGACAGATAGAGACTTTTAAGAAGACAAAACACC
AATTGCTTCAATCACTTAATTGGAAATATTTTCTCTATCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGATCTCAATCCTGAATCCCATAAATGGCTACTGCACAACTGTAAATTAAATAAAGTG
GACCAAAAGGTGAAAGTCTTTAACTTGGGATGGGAAAGACTTCCTCCAAGGACCCGTCAG
AGAAGAGTTAATGCAGCAACTGGGATTACTGTCAAAAGAAAGAAAACACTCTGTGCACAT
TGTCATGAACTTGCCAGCAAAGGCAGTTGAGTTTCTCTGTGCTTTCAAATCACTCTTAGA
TGGACAGCCATGCAGCAGTGAGCTCCTTCCCATAGTGCACTGTTACAGCTTTTCCAAAGA
TGCTAATCCTGCTAAGGATGTTCAGCAACAAGCTGGAACTGTGTTAGGTGTTTCCTTGGA
GGCATGCAGTTCAGTTCACCTAGTAAGAAATGTGGCCCCCAACAAGGAAATGTTATGCAT
CACCTTTCAGATTCCTGCTGCTGTACTCTACAAGAATCAGACCGAAAATCAAGAGACTCA
TGATGATCCACCTCTTAAACGCCAGAGGACAGATAGAGACTTTTAAGAAGACAAAACACC
AATTGCTTCAATCACTTAATTGGAAATATTTTCTCTATCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61832809|ref|XP_596983.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61832809|ref|XP_596983.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               41-160, - strand, RNAz p=0.630408
               

               
               272-391, - strand, RNAz p=0.943907
               

               
               485-581, - strand, RNAz p=0.984689

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-160, - strand, RNAz p=0.630408
               

               
               272-391, - strand, RNAz p=0.943907
               

               
               485-581, - strand, RNAz p=0.984689

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-581, gnl|bosTau2|chr19 (5326329-5325741)
               

               
               1-581, gnl|Hg17|chr14 (60512414-60511558)
               

               
               1-581, gnl|Mm7|chr12 (71232017-71231072)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-581, gnl|bosTau2|chr19 (5326329-5325741)
               

               
               1-581, gnl|Hg17|chr14 (60512414-60511558)
               

               
               1-581, gnl|Mm7|chr12 (71232017-71231072)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	41-160, - strand, RNAz p=0.630408
	272-391, - strand, RNAz p=0.943907
	485-581, - strand, RNAz p=0.984689

	1-581, gnl\|bosTau2\|chr19 (5326329-5325741)
	1-581, gnl\|Hg17\|chr14 (60512414-60511558)
	1-581, gnl\|Mm7\|chr12 (71232017-71231072)