Non-Coding RNA Search

rplac_6675.y1

Sequence:


               
               AGGCGCGACGTCAGGCTGGTCGTTGCTGCTCCTGGGGCGGACCGGGCCGAAACGGACCAG
ACATTGAACTATACAGCGGCCGGAGTATCGCCCTATTCTGTTCACCTCGCTCTGCGTCCA
GAGAATCCCTCCCCCGCGTCTTGAGCCGAATCAGAAGGCCTACTGGTGCCAGAGTCGCTG
GCGCCCGCGCAGGTGCGCCCTCAGGCTGGAAATGACAGGCGTAGACGTCGGGGAGCCCAG
GCTGTGGCCATCTCTTGGATCCCAAGGTAGCACTGGCAAGGGAGGGAGGACACAGGGACT
TCTGATTGGGCTGCAATGGTGGTCTGCAATGGTGGTGAGTCCCCCAGGGCCACCCCAGCC
CACAGCTGACTAAAGATAGCCCTTCACTTCCTGGAGTAAAGCCACTGTAAGTGTCCTCAT
GCACCAAGAGTAGCTGAAGACCCCAGCTCAGCCTCTGGCCCCCAATCCTATTAGCAGCTG
ACCCTAGGTTGTGCACCTGCGGCATGGAAAGTGCTTTGGAATGACACGATCACTCCCGTT
GAGTGGGCACCCAAGTAGCCATCGGGAATGTCGTGTCCGCCCAGTGCTCTTTCGGAGCCT
CCCTGCAGGGCCTTGCAACCCTGGCCCAGAAAGGGACCTTGCCAAGCTTTTCCTGCTCCT
AGAATCCTCTCTCTTCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCGCGACGTCAGGCTGGTCGTTGCTGCTCCTGGGGCGGACCGGGCCGAAACGGACCAG
ACATTGAACTATACAGCGGCCGGAGTATCGCCCTATTCTGTTCACCTCGCTCTGCGTCCA
GAGAATCCCTCCCCCGCGTCTTGAGCCGAATCAGAAGGCCTACTGGTGCCAGAGTCGCTG
GCGCCCGCGCAGGTGCGCCCTCAGGCTGGAAATGACAGGCGTAGACGTCGGGGAGCCCAG
GCTGTGGCCATCTCTTGGATCCCAAGGTAGCACTGGCAAGGGAGGGAGGACACAGGGACT
TCTGATTGGGCTGCAATGGTGGTCTGCAATGGTGGTGAGTCCCCCAGGGCCACCCCAGCC
CACAGCTGACTAAAGATAGCCCTTCACTTCCTGGAGTAAAGCCACTGTAAGTGTCCTCAT
GCACCAAGAGTAGCTGAAGACCCCAGCTCAGCCTCTGGCCCCCAATCCTATTAGCAGCTG
ACCCTAGGTTGTGCACCTGCGGCATGGAAAGTGCTTTGGAATGACACGATCACTCCCGTT
GAGTGGGCACCCAAGTAGCCATCGGGAATGTCGTGTCCGCCCAGTGCTCTTTCGGAGCCT
CCCTGCAGGGCCTTGCAACCCTGGCCCAGAAAGGGACCTTGCCAAGCTTTTCCTGCTCCT
AGAATCCTCTCTCTTCTGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               461-618, - strand, RNAz p=0.988645

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               461-618, - strand, RNAz p=0.988645

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               495-621, - strand, RNAmicro p=0.999991
               

               
               511-607, + strand, RNAmicro p=0.999908

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               495-621, - strand, RNAmicro p=0.999991
               

               
               511-607, + strand, RNAmicro p=0.999908

ncRNA annotation: 1 entry(ies)

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ncRNA annotation: 1 entry(ies)

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               508-592, MI0001447 (mmu-mir-425), blast E-value=7.00005e-41

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               508-592, MI0001447 (mmu-mir-425), blast E-value=7.00005e-41

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               190-679, gnl|bosTau2|chr22 (40015796-40015319)
               

               
               190-679, gnl|Hg17|chr3 (49032976-49032493)
               

               
               190-679, gnl|Mm7|chr9 (108281150-108281597)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               190-679, gnl|bosTau2|chr22 (40015796-40015319)
               

               
               190-679, gnl|Hg17|chr3 (49032976-49032493)
               

               
               190-679, gnl|Mm7|chr9 (108281150-108281597)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	495-621, - strand, RNAmicro p=0.999991
	511-607, + strand, RNAmicro p=0.999908

	190-679, gnl\|bosTau2\|chr22 (40015796-40015319)
	190-679, gnl\|Hg17\|chr3 (49032976-49032493)
	190-679, gnl\|Mm7\|chr9 (108281150-108281597)