Non-Coding RNA Search

rplac_6826.y1

Sequence:


               
               GCCTGGGACTTCTGAGGGGGCGTGGTGCCCGCCCATCCCAGGACTGAGCCATCAGGGACA
GACCCCCCCACCCCCAAGGCTGCAGCCACACAGGGTCACAGGCTTGGGGCTGGGGCAGGC
TCGGACTCAGCCCTGGTCGCCCCCGGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTGGGACTTCTGAGGGGGCGTGGTGCCCGCCCATCCCAGGACTGAGCCATCAGGGACA
GACCCCCCCACCCCCAAGGCTGCAGCCACACAGGGTCACAGGCTTGGGGCTGGGGCAGGC
TCGGACTCAGCCCTGGTCGCCCCCGGGT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-148, - strand, RNAz p=0.995198
               

               
               5-148, - strand, RNAz p=0.821873

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-148, - strand, RNAz p=0.995198
               

               
               5-148, - strand, RNAz p=0.821873

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               41-147, - strand, RNAmicro p=0.99998

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               41-147, - strand, RNAmicro p=0.99998

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-148, gnl|bosTau2|chr29 (31454104-31454251)
               

               
               1-148, gnl|canFam2|chr18 (57758007-57757544)
               

               
               1-148, gnl|dasNov1|scaffold_208087 (46-475)
               

               
               1-148, gnl|hg17|chr11 (61270401-61270847)
               

               
               1-148, gnl|Hg17|chr11 (61270486-61270628)
               

               
               1-148, gnl|loxAfr1|scaffold_18592 (9777-10261)
               

               
               1-148, gnl|mm7|chr19 (9926041-9925592)
               

               
               1-148, gnl|Mm7|chr19 (9925954-9925809)
               

               
               1-148, gnl|oryCun1|scaffold_211501 (1611-2075)
               

               
               1-148, gnl|panTro1|chr9 (62199842-62200289)
               

               
               1-148, gnl|rheMac2|chr14 (12338936-12338493)
               

               
               1-148, gnl|rn3|chr1 (212892717-212892288)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-148, gnl|bosTau2|chr29 (31454104-31454251)
               

               
               1-148, gnl|canFam2|chr18 (57758007-57757544)
               

               
               1-148, gnl|dasNov1|scaffold_208087 (46-475)
               

               
               1-148, gnl|hg17|chr11 (61270401-61270847)
               

               
               1-148, gnl|Hg17|chr11 (61270486-61270628)
               

               
               1-148, gnl|loxAfr1|scaffold_18592 (9777-10261)
               

               
               1-148, gnl|mm7|chr19 (9926041-9925592)
               

               
               1-148, gnl|Mm7|chr19 (9925954-9925809)
               

               
               1-148, gnl|oryCun1|scaffold_211501 (1611-2075)
               

               
               1-148, gnl|panTro1|chr9 (62199842-62200289)
               

               
               1-148, gnl|rheMac2|chr14 (12338936-12338493)
               

               
               1-148, gnl|rn3|chr1 (212892717-212892288)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	1-148, - strand, RNAz p=0.995198
	5-148, - strand, RNAz p=0.821873

	1-148, gnl\|bosTau2\|chr29 (31454104-31454251)
	1-148, gnl\|canFam2\|chr18 (57758007-57757544)
	1-148, gnl\|dasNov1\|scaffold_208087 (46-475)
	1-148, gnl\|hg17\|chr11 (61270401-61270847)
	1-148, gnl\|Hg17\|chr11 (61270486-61270628)
	1-148, gnl\|loxAfr1\|scaffold_18592 (9777-10261)
	1-148, gnl\|mm7\|chr19 (9926041-9925592)
	1-148, gnl\|Mm7\|chr19 (9925954-9925809)
	1-148, gnl\|oryCun1\|scaffold_211501 (1611-2075)
	1-148, gnl\|panTro1\|chr9 (62199842-62200289)
	1-148, gnl\|rheMac2\|chr14 (12338936-12338493)
	1-148, gnl\|rn3\|chr1 (212892717-212892288)