Non-Coding RNA Search

rplac_6831.y1

Sequence:


               
               AGGACATAGGAACGGCCCATCAGATTTCTGAGCCATTTGTCACTGGAAGAAAATAGTGTA
CCTTCATATTATTTGCGTGCTCAAGGCCATACCTAATAGCAATAAATAGGTCTAGCCAAG
ACATTGTTGTCTCTGTCATTAGCTGGGAGTGCTCTCTATAAGCTGATTAAGGTACTGATA
GGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGACATAGGAACGGCCCATCAGATTTCTGAGCCATTTGTCACTGGAAGAAAATAGTGTA
CCTTCATATTATTTGCGTGCTCAAGGCCATACCTAATAGCAATAAATAGGTCTAGCCAAG
ACATTGTTGTCTCTGTCATTAGCTGGGAGTGCTCTCTATAAGCTGATTAAGGTACTGATA
GGAA

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-184, gnl|bosTau2|chr15 (24195237-24195427)
               

               
               1-184, gnl|canFam2|chr21 (41926360-41926626)
               

               
               1-184, gnl|echTel1|scaffold_260938 (6768-6519)
               

               
               1-184, gnl|galGal2|chr5 (8703432-8703705)
               

               
               1-184, gnl|hg17|chr11 (15948744-15949004)
               

               
               1-184, gnl|Hg17|chr11 (15948955-15948770)
               

               
               1-184, gnl|loxAfr1|scaffold_1315 (99409-99143)
               

               
               1-184, gnl|mm7|chr7 (111391016-111391260)
               

               
               1-184, gnl|Mm7|chr7 (111391228-111391041)
               

               
               1-184, gnl|monDom2|scaffold_10 (55998262-55997989)
               

               
               1-184, gnl|oryCun1|scaffold_173287 (59672-59936)
               

               
               1-184, gnl|panTro1|chr9 (16157922-16158182)
               

               
               1-184, gnl|rheMac2|chr14 (55967568-55967308)
               

               
               1-184, gnl|rn3|chr1 (173694278-173694529)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-184, gnl|bosTau2|chr15 (24195237-24195427)
               

               
               1-184, gnl|canFam2|chr21 (41926360-41926626)
               

               
               1-184, gnl|echTel1|scaffold_260938 (6768-6519)
               

               
               1-184, gnl|galGal2|chr5 (8703432-8703705)
               

               
               1-184, gnl|hg17|chr11 (15948744-15949004)
               

               
               1-184, gnl|Hg17|chr11 (15948955-15948770)
               

               
               1-184, gnl|loxAfr1|scaffold_1315 (99409-99143)
               

               
               1-184, gnl|mm7|chr7 (111391016-111391260)
               

               
               1-184, gnl|Mm7|chr7 (111391228-111391041)
               

               
               1-184, gnl|monDom2|scaffold_10 (55998262-55997989)
               

               
               1-184, gnl|oryCun1|scaffold_173287 (59672-59936)
               

               
               1-184, gnl|panTro1|chr9 (16157922-16158182)
               

               
               1-184, gnl|rheMac2|chr14 (55967568-55967308)
               

               
               1-184, gnl|rn3|chr1 (173694278-173694529)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	1-184, gnl\|bosTau2\|chr15 (24195237-24195427)
	1-184, gnl\|canFam2\|chr21 (41926360-41926626)
	1-184, gnl\|echTel1\|scaffold_260938 (6768-6519)
	1-184, gnl\|galGal2\|chr5 (8703432-8703705)
	1-184, gnl\|hg17\|chr11 (15948744-15949004)
	1-184, gnl\|Hg17\|chr11 (15948955-15948770)
	1-184, gnl\|loxAfr1\|scaffold_1315 (99409-99143)
	1-184, gnl\|mm7\|chr7 (111391016-111391260)
	1-184, gnl\|Mm7\|chr7 (111391228-111391041)
	1-184, gnl\|monDom2\|scaffold_10 (55998262-55997989)
	1-184, gnl\|oryCun1\|scaffold_173287 (59672-59936)
	1-184, gnl\|panTro1\|chr9 (16157922-16158182)
	1-184, gnl\|rheMac2\|chr14 (55967568-55967308)
	1-184, gnl\|rn3\|chr1 (173694278-173694529)