Non-Coding RNA Search

rplac_6945.y1

Sequence:


               
               ACACGGAGTTCTTTGATGCCTGTGAGGTTCTCCTCTCTGCCAGCTCTTCTGAGAATGAGG
GCTCGGAGGAGGAGGAGTCATGCACCAGTGAAGTCACCACCAGCCTGTCCGAGGAGGTTC
TGGACCTCAGGGGAGCTGAACCCTGTCAGAAAGGGGGAGCTGCAGGGCCACCCAGGCGCC
GATGCCTGCCGGCAGCCAGCGGCCCCGGGGCTGACGTGAGCTTGTGGAACATCCTACGCA
ACAACATTGGCAAAGACCTGTCGAAGGTGTCGATGCCCGTGCAGCTCAATGAGCCGCTCA
ACACCCTGCAGCGGCTCTGCGAGGAGCTGGAGTACAGCAGCCTCCTGGACCAGGCCAGCC
GCACCGCGGACCCCTGCGAGCGCATGGTGTACATCGCAGCTTTTGCCGTCTCCGCCTACT
CGTCCACCTACCACCGGGCGGGCTGCAAGCCCTTCAACCCTGTGCTGGGGGAGACCTACG
AGTGCGAGCGGCCTGACCGCGGCTTCCGCTTCATCAGTGAGCAGGTCTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACGGAGTTCTTTGATGCCTGTGAGGTTCTCCTCTCTGCCAGCTCTTCTGAGAATGAGG
GCTCGGAGGAGGAGGAGTCATGCACCAGTGAAGTCACCACCAGCCTGTCCGAGGAGGTTC
TGGACCTCAGGGGAGCTGAACCCTGTCAGAAAGGGGGAGCTGCAGGGCCACCCAGGCGCC
GATGCCTGCCGGCAGCCAGCGGCCCCGGGGCTGACGTGAGCTTGTGGAACATCCTACGCA
ACAACATTGGCAAAGACCTGTCGAAGGTGTCGATGCCCGTGCAGCTCAATGAGCCGCTCA
ACACCCTGCAGCGGCTCTGCGAGGAGCTGGAGTACAGCAGCCTCCTGGACCAGGCCAGCC
GCACCGCGGACCCCTGCGAGCGCATGGTGTACATCGCAGCTTTTGCCGTCTCCGCCTACT
CGTCCACCTACCACCGGGCGGGCTGCAAGCCCTTCAACCCTGTGCTGGGGGAGACCTACG
AGTGCGAGCGGCCTGACCGCGGCTTCCGCTTCATCAGTGAGCAGGTCTCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               231-350, - strand, RNAz p=0.931172

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               231-350, - strand, RNAz p=0.931172

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               152-388, gnl|bosTau2|chr19 (30705375-30705611)
               

               
               152-388, gnl|Hg17|chr17 (43246186-43245950)
               

               
               152-388, gnl|Mm7|chr11 (97169095-97169331)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               152-388, gnl|bosTau2|chr19 (30705375-30705611)
               

               
               152-388, gnl|Hg17|chr17 (43246186-43245950)
               

               
               152-388, gnl|Mm7|chr11 (97169095-97169331)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	152-388, gnl\|bosTau2\|chr19 (30705375-30705611)
	152-388, gnl\|Hg17\|chr17 (43246186-43245950)
	152-388, gnl\|Mm7\|chr11 (97169095-97169331)