Non-Coding RNA Search

rplac_6992.y1

Sequence:


               
               GGTTCGTTACTACCAAGCCACAAGGGAACTCCCTAGGGAAAGCTTCTGTGTGCCCACAGG
ACATAGGGTTGTTTCCACTTaataacagctttaccaagatataattcatatactatacaa
tttacctatttataatttacaattcaacaacttttagtatattcacagagttgtgcaacc
atcaccacaatcgattttagaacattttcatTATCTTAAAAAAAAACTTGCACCCCAAGT
TATTACCCCTCAAACCCCTCTTCTGCCCCTTCCCCAGCCTGAGGCAATCATTAACCTTTC
TATCTCTGTAGCTTTGCTTATCCTGATCAACTCATATAAATGGAATCATACAGTGAAAAA
AAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTCGTTACTACCAAGCCACAAGGGAACTCCCTAGGGAAAGCTTCTGTGTGCCCACAGG
ACATAGGGTTGTTTCCACTTaataacagctttaccaagatataattcatatactatacaa
tttacctatttataatttacaattcaacaacttttagtatattcacagagttgtgcaacc
atcaccacaatcgattttagaacattttcatTATCTTAAAAAAAAACTTGCACCCCAAGT
TATTACCCCTCAAACCCCTCTTCTGCCCCTTCCCCAGCCTGAGGCAATCATTAACCTTTC
TATCTCTGTAGCTTTGCTTATCCTGATCAACTCATATAAATGGAATCATACAGTGAAAAA
AAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               34-129, + strand, RNAz p=0.686689

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               34-129, + strand, RNAz p=0.686689

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               34-351, gnl|bosTau2|chr11 (9969214-9969533)
               

               
               34-351, gnl|hg17|chr2 (71106201-71106498)
               

               
               34-351, gnl|Hg17|chr2 (71106250-71106583)
               

               
               34-351, gnl|loxAfr1|scaffold_17768 (10340-10197)
               

               
               34-351, gnl|panTro1|chr12 (73437105-73437383)
               

               
               34-351, gnl|rheMac2|chr13 (71269844-71270118)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-351, gnl|bosTau2|chr11 (9969214-9969533)
               

               
               34-351, gnl|hg17|chr2 (71106201-71106498)
               

               
               34-351, gnl|Hg17|chr2 (71106250-71106583)
               

               
               34-351, gnl|loxAfr1|scaffold_17768 (10340-10197)
               

               
               34-351, gnl|panTro1|chr12 (73437105-73437383)
               

               
               34-351, gnl|rheMac2|chr13 (71269844-71270118)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	34-351, gnl\|bosTau2\|chr11 (9969214-9969533)
	34-351, gnl\|hg17\|chr2 (71106201-71106498)
	34-351, gnl\|Hg17\|chr2 (71106250-71106583)
	34-351, gnl\|loxAfr1\|scaffold_17768 (10340-10197)
	34-351, gnl\|panTro1\|chr12 (73437105-73437383)
	34-351, gnl\|rheMac2\|chr13 (71269844-71270118)