Non-Coding RNA Search

rplac_7144.y1

Sequence:


               
               ATGGGCAGCGATCCCCTCCAACAGAACATTTACGAGAACTTCATGCGAGAGCTGGAGATG
AGCAGGACCAACACGGAGAACGTGGAGACCTCCACAGAGACCGCCGAGTCCAGCAGCGAG
TCGCTCAGCTCTTTGGAGCAGCTGGACCTGCTCTTTGAGAAGGAGCAGGGAGTGGTCCGC
AAAGCCGGGTGGCTCTTCTTCAAACCCCTGGTCACGCTGCAGAAGGAAAGGAAGCTGGAG
CTGGTGGCTCGGAGGAAGTGGAAACAGTACTGGGTGACGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGGCAGCGATCCCCTCCAACAGAACATTTACGAGAACTTCATGCGAGAGCTGGAGATG
AGCAGGACCAACACGGAGAACGTGGAGACCTCCACAGAGACCGCCGAGTCCAGCAGCGAG
TCGCTCAGCTCTTTGGAGCAGCTGGACCTGCTCTTTGAGAAGGAGCAGGGAGTGGTCCGC
AAAGCCGGGTGGCTCTTCTTCAAACCCCTGGTCACGCTGCAGAAGGAAAGGAAGCTGGAG
CTGGTGGCTCGGAGGAAGTGGAAACAGTACTGGGTGACGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-199, + strand, RNAz p=0.622416

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-199, + strand, RNAz p=0.622416

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AB209674, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AB209674, +

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-278, gnl|bosTau2|chr9 (54038735-54038458)
               

               
               1-278, gnl|canFam2|chr1 (47947454-47947921)
               

               
               1-278, gnl|danRer3|chrNA (34376687-34376178)
               

               
               1-278, gnl|dasNov1|scaffold_1991 (69339-68872)
               

               
               1-278, gnl|echTel1|scaffold_279109 (14682-14217)
               

               
               1-278, gnl|fr1|chrUn (120103216-120103697)
               

               
               1-278, gnl|galGal2|chr3 (49462469-49462908)
               

               
               1-278, gnl|hg17|chr6 (155550406-155550873)
               

               
               1-278, gnl|Hg17|chr6 (155550574-155550851)
               

               
               1-278, gnl|loxAfr1|scaffold_8423 (20038-20493)
               

               
               1-278, gnl|mm7|chr17 (3420997-3421467)
               

               
               1-278, gnl|Mm7|chr17 (3421165-3421442)
               

               
               1-278, gnl|monDom2|scaffold_0 (49564533-49564066)
               

               
               1-278, gnl|oryCun1|scaffold_207667 (52804-52337)
               

               
               1-278, gnl|panTro1|chr5 (159114564-159115031)
               

               
               1-278, gnl|rheMac2|chr4 (107822107-107821640)
               

               
               1-278, gnl|rn3|chr1 (38407728-38408195)
               

               
               1-278, gnl|tetNig1|chr10 (2638246-2637782)
               

               
               1-278, gnl|xenTro1|scaffold_390 (290591-290157)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-278, gnl|bosTau2|chr9 (54038735-54038458)
               

               
               1-278, gnl|canFam2|chr1 (47947454-47947921)
               

               
               1-278, gnl|danRer3|chrNA (34376687-34376178)
               

               
               1-278, gnl|dasNov1|scaffold_1991 (69339-68872)
               

               
               1-278, gnl|echTel1|scaffold_279109 (14682-14217)
               

               
               1-278, gnl|fr1|chrUn (120103216-120103697)
               

               
               1-278, gnl|galGal2|chr3 (49462469-49462908)
               

               
               1-278, gnl|hg17|chr6 (155550406-155550873)
               

               
               1-278, gnl|Hg17|chr6 (155550574-155550851)
               

               
               1-278, gnl|loxAfr1|scaffold_8423 (20038-20493)
               

               
               1-278, gnl|mm7|chr17 (3420997-3421467)
               

               
               1-278, gnl|Mm7|chr17 (3421165-3421442)
               

               
               1-278, gnl|monDom2|scaffold_0 (49564533-49564066)
               

               
               1-278, gnl|oryCun1|scaffold_207667 (52804-52337)
               

               
               1-278, gnl|panTro1|chr5 (159114564-159115031)
               

               
               1-278, gnl|rheMac2|chr4 (107822107-107821640)
               

               
               1-278, gnl|rn3|chr1 (38407728-38408195)
               

               
               1-278, gnl|tetNig1|chr10 (2638246-2637782)
               

               
               1-278, gnl|xenTro1|scaffold_390 (290591-290157)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	1-278, gnl\|bosTau2\|chr9 (54038735-54038458)
	1-278, gnl\|canFam2\|chr1 (47947454-47947921)
	1-278, gnl\|danRer3\|chrNA (34376687-34376178)
	1-278, gnl\|dasNov1\|scaffold_1991 (69339-68872)
	1-278, gnl\|echTel1\|scaffold_279109 (14682-14217)
	1-278, gnl\|fr1\|chrUn (120103216-120103697)
	1-278, gnl\|galGal2\|chr3 (49462469-49462908)
	1-278, gnl\|hg17\|chr6 (155550406-155550873)
	1-278, gnl\|Hg17\|chr6 (155550574-155550851)
	1-278, gnl\|loxAfr1\|scaffold_8423 (20038-20493)
	1-278, gnl\|mm7\|chr17 (3420997-3421467)
	1-278, gnl\|Mm7\|chr17 (3421165-3421442)
	1-278, gnl\|monDom2\|scaffold_0 (49564533-49564066)
	1-278, gnl\|oryCun1\|scaffold_207667 (52804-52337)
	1-278, gnl\|panTro1\|chr5 (159114564-159115031)
	1-278, gnl\|rheMac2\|chr4 (107822107-107821640)
	1-278, gnl\|rn3\|chr1 (38407728-38408195)
	1-278, gnl\|tetNig1\|chr10 (2638246-2637782)
	1-278, gnl\|xenTro1\|scaffold_390 (290591-290157)