Non-Coding RNA Search

rplac_7236.y1

Sequence:


               
               CATCTTTTTAGAAAACCACAAAGATCTTTTTTGGCAAGTTATGCAAGAATTTAGACTGTA
GCAGCTGATCGAAGGCTTTAACTGCCTATACTTACCTGACTATTTTTGATCTTTTTAGTT
TAATGACATGTTTAATAAGTTACTGGGTAATGATGAGAAAACCTAGCCCTGCCTATTCAT
TTGGATTTGAAAGATTAGAAGTCCTGGCTGTATTTGCTTCCACAGTCTTGGCACAATTGG
GAGCTCTCTTTATATTAAAAGAAAGTGCAGAACGCTTTTNGGAGCAGCCCGAGATACACA
CGGGAAGATTATTAGTTGGTACTTTTGTGGCTCTTTCTTTCAACCTGTTCACGATGCTTT
CTGTTCGGAATAAACCTTTTGCTTATGTCTCTGAAGCTGCTAGTACGAGTTGGCTTCAAG
AGCATGTTGCAGACCTTAGTAGAAGCTTGTGTGGAATTATTCCAGGACTTAGCAGTATCT
TCCTTCCTCGAATGAATCCATTTGTTTTGATTGATCTTGCTGGAGCATTTGCTCTTTGTA
TTACTTATATGCTAATTGAAATTAATAATTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCTTTTTAGAAAACCACAAAGATCTTTTTTGGCAAGTTATGCAAGAATTTAGACTGTA
GCAGCTGATCGAAGGCTTTAACTGCCTATACTTACCTGACTATTTTTGATCTTTTTAGTT
TAATGACATGTTTAATAAGTTACTGGGTAATGATGAGAAAACCTAGCCCTGCCTATTCAT
TTGGATTTGAAAGATTAGAAGTCCTGGCTGTATTTGCTTCCACAGTCTTGGCACAATTGG
GAGCTCTCTTTATATTAAAAGAAAGTGCAGAACGCTTTTNGGAGCAGCCCGAGATACACA
CGGGAAGATTATTAGTTGGTACTTTTGTGGCTCTTTCTTTCAACCTGTTCACGATGCTTT
CTGTTCGGAATAAACCTTTTGCTTATGTCTCTGAAGCTGCTAGTACGAGTTGGCTTCAAG
AGCATGTTGCAGACCTTAGTAGAAGCTTGTGTGGAATTATTCCAGGACTTAGCAGTATCT
TCCTTCCTCGAATGAATCCATTTGTTTTGATTGATCTTGCTGGAGCATTTGCTCTTTGTA
TTACTTATATGCTAATTGAAATTAATAATTATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61814104|ref|XP_596295.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61814104|ref|XP_596295.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               444-562, + strand, RNAz p=0.58548

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               444-562, + strand, RNAz p=0.58548

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC032525, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC032525, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               444-573, gnl|bosTau2|chr11 (12484188-12484318)
               

               
               444-573, gnl|Hg17|chr2 (32334425-32334555)
               

               
               444-573, gnl|Mm7|chr17 (72701770-72701900)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               444-573, gnl|bosTau2|chr11 (12484188-12484318)
               

               
               444-573, gnl|Hg17|chr2 (32334425-32334555)
               

               
               444-573, gnl|Mm7|chr17 (72701770-72701900)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	444-573, gnl\|bosTau2\|chr11 (12484188-12484318)
	444-573, gnl\|Hg17\|chr2 (32334425-32334555)
	444-573, gnl\|Mm7\|chr17 (72701770-72701900)