Non-Coding RNA Search

rplac_7449.y1

Sequence:


               
               TCCCCGGCGGCCCCATGCCCCGATGCCCCGCGGGGACCATGGACGAGGGGCCCGTGGACC
TGCGCACCCGGCCCAAGGCCGGCGGACCCCCCGGCGCCGCGCTGCCGCTCCGCAAGCGCC
CTCTGCGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCCGGCGGCCCCATGCCCCGATGCCCCGCGGGGACCATGGACGAGGGGCCCGTGGACC
TGCGCACCCGGCCCAAGGCCGGCGGACCCCCCGGCGCCGCGCTGCCGCTCCGCAAGCGCC
CTCTGCGCCC

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               1-128, gnl|bosTau2|chr6 (49087957-49087830)
               

               
               1-128, gnl|canFam2|chr1 (113519827-113519649)
               

               
               1-128, gnl|dasNov1|scaffold_113924 (4132-3954)
               

               
               1-128, gnl|hg17|chr19 (49943787-49943953)
               

               
               1-128, gnl|Hg17|chr19 (49943874-49944001)
               

               
               1-128, gnl|mm7|chr7 (17505149-17504988)
               

               
               1-128, gnl|Mm7|chr7 (17505066-17504944)
               

               
               1-128, gnl|monDom2|scaffold_221 (279979-279728)
               

               
               1-128, gnl|panTro1|chr20 (47080390-47080556)
               

               
               1-128, gnl|rheMac2|chr19 (51184259-51184425)
               

               
               1-128, gnl|rn3|chr1 (79215206-79215045)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-128, gnl|bosTau2|chr6 (49087957-49087830)
               

               
               1-128, gnl|canFam2|chr1 (113519827-113519649)
               

               
               1-128, gnl|dasNov1|scaffold_113924 (4132-3954)
               

               
               1-128, gnl|hg17|chr19 (49943787-49943953)
               

               
               1-128, gnl|Hg17|chr19 (49943874-49944001)
               

               
               1-128, gnl|mm7|chr7 (17505149-17504988)
               

               
               1-128, gnl|Mm7|chr7 (17505066-17504944)
               

               
               1-128, gnl|monDom2|scaffold_221 (279979-279728)
               

               
               1-128, gnl|panTro1|chr20 (47080390-47080556)
               

               
               1-128, gnl|rheMac2|chr19 (51184259-51184425)
               

               
               1-128, gnl|rn3|chr1 (79215206-79215045)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	1-128, gnl\|bosTau2\|chr6 (49087957-49087830)
	1-128, gnl\|canFam2\|chr1 (113519827-113519649)
	1-128, gnl\|dasNov1\|scaffold_113924 (4132-3954)
	1-128, gnl\|hg17\|chr19 (49943787-49943953)
	1-128, gnl\|Hg17\|chr19 (49943874-49944001)
	1-128, gnl\|mm7\|chr7 (17505149-17504988)
	1-128, gnl\|Mm7\|chr7 (17505066-17504944)
	1-128, gnl\|monDom2\|scaffold_221 (279979-279728)
	1-128, gnl\|panTro1\|chr20 (47080390-47080556)
	1-128, gnl\|rheMac2\|chr19 (51184259-51184425)
	1-128, gnl\|rn3\|chr1 (79215206-79215045)