Non-Coding RNA Search

rplac_7660.y1

Sequence:


               
               GTTAGCATTTCAGCGACCTCCTCAGAATACCAGAGGGCTCTTTGTCTTCCTTTCAGTAAG
CCCTCAGGACAAAAATAAGAGTTTAGGATCTCACTGGGATTGGTTAGTCTCACTGGGATT
AGTAGACCATCCTAAGTGTTGGTAAGACTGCATACTGACTGTCCAAGGTGCCATCATTGG
GGAAGCCTCGGTTTCATTGGAAGTGTTTGGTCAGTTGAGATTTTAAGGGCCATTCTACAG
CATCCCCAGACCCCCTTGCTGAAGTCCCTCAGGTTTTCCTTTGGCCAAGGCCCATTTTTC
CTTTTCACTCCAAGACTGACCTGTTCTTCGACCTTGGGAAAGCACAGCTCCTCTGTGCTC
AGTTTCAGGGCACAGTGCTGCCCATGGTTGCACTTGAGCTTAATAAAAGGGTTTTATTCC
CGTGGAAGGAGAGATTTTATAAAATCCTTAATATTCAGTGGATGTCAGAAGTGAATAGTA
AAGCCTGTTAGCTCATTTTCACATTTTCTGGCACTGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTAGCATTTCAGCGACCTCCTCAGAATACCAGAGGGCTCTTTGTCTTCCTTTCAGTAAG
CCCTCAGGACAAAAATAAGAGTTTAGGATCTCACTGGGATTGGTTAGTCTCACTGGGATT
AGTAGACCATCCTAAGTGTTGGTAAGACTGCATACTGACTGTCCAAGGTGCCATCATTGG
GGAAGCCTCGGTTTCATTGGAAGTGTTTGGTCAGTTGAGATTTTAAGGGCCATTCTACAG
CATCCCCAGACCCCCTTGCTGAAGTCCCTCAGGTTTTCCTTTGGCCAAGGCCCATTTTTC
CTTTTCACTCCAAGACTGACCTGTTCTTCGACCTTGGGAAAGCACAGCTCCTCTGTGCTC
AGTTTCAGGGCACAGTGCTGCCCATGGTTGCACTTGAGCTTAATAAAAGGGTTTTATTCC
CGTGGAAGGAGAGATTTTATAAAATCCTTAATATTCAGTGGATGTCAGAAGTGAATAGTA
AAGCCTGTTAGCTCATTTTCACATTTTCTGGCACTGGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               319-436, + strand, RNAz p=0.99288

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               319-436, + strand, RNAz p=0.99288

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               202-516, gnl|bosTau2|chr1 (29239637-29239948)
               

               
               202-516, gnl|Hg17|chr3 (109002247-109002562)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               202-516, gnl|bosTau2|chr1 (29239637-29239948)
               

               
               202-516, gnl|Hg17|chr3 (109002247-109002562)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	202-516, gnl\|bosTau2\|chr1 (29239637-29239948)
	202-516, gnl\|Hg17\|chr3 (109002247-109002562)