Non-Coding RNA Search

rplac_8326.y1

Sequence:


               
               ATTTCCCTCCTTTTTTTCCCAACAAGGCCTGTGATTATTACATTAATCTTCCAGGTGAAG
TTTTTACGACCCATCGCTCGCTGACTATGAGAAGTTTCTCCATCCATTACCAGAGGGAAA
CAGACCCTGGTGGGGAAGAAAATATTTGTTACATCTTATCAGGCTGACACACAATCTACC
AACAATTACAGCAGCCCCATTTTTTGCACTATTTCAGCTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTCCCTCCTTTTTTTCCCAACAAGGCCTGTGATTATTACATTAATCTTCCAGGTGAAG
TTTTTACGACCCATCGCTCGCTGACTATGAGAAGTTTCTCCATCCATTACCAGAGGGAAA
CAGACCCTGGTGGGGAAGAAAATATTTGTTACATCTTATCAGGCTGACACACAATCTACC
AACAATTACAGCAGCCCCATTTTTTGCACTATTTCAGCTCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-118, - strand, RNAz p=0.665311

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, - strand, RNAz p=0.665311

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-222, gnl|bosTau2|chr22 (47092285-47092507)
               

               
               1-222, gnl|canFam2|chr20 (5097222-5097445)
               

               
               1-222, gnl|echTel1|scaffold_271930 (4577-4798)
               

               
               1-222, gnl|galGal2|chr12 (9548819-9548601)
               

               
               1-222, gnl|hg17|chr3 (129280115-129280337)
               

               
               1-222, gnl|Hg17|chr3 (129280406-129280184)
               

               
               1-222, gnl|loxAfr1|scaffold_8280 (49211-49432)
               

               
               1-222, gnl|mm7|chr6 (88574359-88574139)
               

               
               1-222, gnl|Mm7|chr6 (88574070-88574289)
               

               
               1-222, gnl|monDom2|scaffold_5 (46657307-46657543)
               

               
               1-222, gnl|oryCun1|scaffold_198424 (181275-181055)
               

               
               1-222, gnl|panTro1|chr2 (131164685-131164907)
               

               
               1-222, gnl|rheMac2|chr11 (86771034-86770812)
               

               
               1-222, gnl|rn3|chr4 (122837903-122837683)
               

               
               1-222, gnl|xenTro1|scaffold_72 (796191-796407)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-222, gnl|bosTau2|chr22 (47092285-47092507)
               

               
               1-222, gnl|canFam2|chr20 (5097222-5097445)
               

               
               1-222, gnl|echTel1|scaffold_271930 (4577-4798)
               

               
               1-222, gnl|galGal2|chr12 (9548819-9548601)
               

               
               1-222, gnl|hg17|chr3 (129280115-129280337)
               

               
               1-222, gnl|Hg17|chr3 (129280406-129280184)
               

               
               1-222, gnl|loxAfr1|scaffold_8280 (49211-49432)
               

               
               1-222, gnl|mm7|chr6 (88574359-88574139)
               

               
               1-222, gnl|Mm7|chr6 (88574070-88574289)
               

               
               1-222, gnl|monDom2|scaffold_5 (46657307-46657543)
               

               
               1-222, gnl|oryCun1|scaffold_198424 (181275-181055)
               

               
               1-222, gnl|panTro1|chr2 (131164685-131164907)
               

               
               1-222, gnl|rheMac2|chr11 (86771034-86770812)
               

               
               1-222, gnl|rn3|chr4 (122837903-122837683)
               

               
               1-222, gnl|xenTro1|scaffold_72 (796191-796407)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	1-222, gnl\|bosTau2\|chr22 (47092285-47092507)
	1-222, gnl\|canFam2\|chr20 (5097222-5097445)
	1-222, gnl\|echTel1\|scaffold_271930 (4577-4798)
	1-222, gnl\|galGal2\|chr12 (9548819-9548601)
	1-222, gnl\|hg17\|chr3 (129280115-129280337)
	1-222, gnl\|Hg17\|chr3 (129280406-129280184)
	1-222, gnl\|loxAfr1\|scaffold_8280 (49211-49432)
	1-222, gnl\|mm7\|chr6 (88574359-88574139)
	1-222, gnl\|Mm7\|chr6 (88574070-88574289)
	1-222, gnl\|monDom2\|scaffold_5 (46657307-46657543)
	1-222, gnl\|oryCun1\|scaffold_198424 (181275-181055)
	1-222, gnl\|panTro1\|chr2 (131164685-131164907)
	1-222, gnl\|rheMac2\|chr11 (86771034-86770812)
	1-222, gnl\|rn3\|chr4 (122837903-122837683)
	1-222, gnl\|xenTro1\|scaffold_72 (796191-796407)