Non-Coding RNA Search

rplac_8680.y1

Sequence:


               
               CCGGGTGGCTCCATTGGCGCTGGCCCGCGCTGGGGGGCTCGATTGGCTGCCCAGCTGGCA
CTGACACTCCCTGGGCGCCTGGTGGCAGCCGGAGGTAAACAGCCATGTGCGATCCTGCTC
TCTATATTTAACAGCTGCCGCAGAGCAGGCAGGGAGGCAGGGAGCAGTGGCGGCTCCTGG
GCTCCCGTCTTGGGGAGAAGGCCCTTGCAGCCAGGCTGGCACCGGCCCTCGCCCTGTGAT
CGTCACCATGCCTGCCTCCCAGAGCCGGGCCCGGGCCCGGGACCGCAACAACATCCTCAA
CCGGGCCGAGTTCCTGTCCCTGAACCAGCCCCCCAAGGGAGCCCCGGAGCCCCGAGGCTC
GGCCAGGAAGGCCTCCGGCCCCTCGGCGCAGCCCCCACCCCCTGGCGACGGGGCCCGTGA
GCGGCGCCAGTCGCAGCAGCTGCCCGAGGAGGACTGCATGCAGCTGAACCCCTCCTTCAA
GGGCATCGCCTTCAACTCCCTGCTGGCCATTGACATCTGCATGTCCAAGCGTCTGGGGGT
GTGCGCCGGCCGGGCCGCGTCCTGGGCCAGCGCCCGCTCCATGGTCAAGCTCATTGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGGTGGCTCCATTGGCGCTGGCCCGCGCTGGGGGGCTCGATTGGCTGCCCAGCTGGCA
CTGACACTCCCTGGGCGCCTGGTGGCAGCCGGAGGTAAACAGCCATGTGCGATCCTGCTC
TCTATATTTAACAGCTGCCGCAGAGCAGGCAGGGAGGCAGGGAGCAGTGGCGGCTCCTGG
GCTCCCGTCTTGGGGAGAAGGCCCTTGCAGCCAGGCTGGCACCGGCCCTCGCCCTGTGAT
CGTCACCATGCCTGCCTCCCAGAGCCGGGCCCGGGCCCGGGACCGCAACAACATCCTCAA
CCGGGCCGAGTTCCTGTCCCTGAACCAGCCCCCCAAGGGAGCCCCGGAGCCCCGAGGCTC
GGCCAGGAAGGCCTCCGGCCCCTCGGCGCAGCCCCCACCCCCTGGCGACGGGGCCCGTGA
GCGGCGCCAGTCGCAGCAGCTGCCCGAGGAGGACTGCATGCAGCTGAACCCCTCCTTCAA
GGGCATCGCCTTCAACTCCCTGCTGGCCATTGACATCTGCATGTCCAAGCGTCTGGGGGT
GTGCGCCGGCCGGGCCGCGTCCTGGGCCAGCGCCCGCTCCATGGTCAAGCTCATTGGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55632497|ref|XP_520326.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55632497|ref|XP_520326.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               158-268, - strand, RNAz p=0.961841

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               158-268, - strand, RNAz p=0.961841

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-599, gnl|bosTau2|chr11 (81887764-81888359)
               

               
               1-599, gnl|Hg17|chr9 (131194685-131195290)
               

               
               1-599, gnl|Mm7|chr2 (32102896-32103474)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-599, gnl|bosTau2|chr11 (81887764-81888359)
               

               
               1-599, gnl|Hg17|chr9 (131194685-131195290)
               

               
               1-599, gnl|Mm7|chr2 (32102896-32103474)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	1-599, gnl\|bosTau2\|chr11 (81887764-81888359)
	1-599, gnl\|Hg17\|chr9 (131194685-131195290)
	1-599, gnl\|Mm7\|chr2 (32102896-32103474)