Non-Coding RNA Search

rplac_9822.y1

Sequence:


               
               TTCTCCTTGACGTCGTCCAGGCATCTGCCGAGGCGCGCCTGCTCCTCCTTGCCGGTGTAG
TCCTGGCTCAGCAGGATGTAGGCCCGCCAGTTGGCCGAGTCGAAGCCCCAGTGGCAGGTC
CGGTTCTCCAGGGCCTTGTGCGAGTGCACCACGAACTTATGCGGTGGGTACAGGAGACGG
CAGTCCAGGCACTGGATGCAGGCGGCGCTCGGGCTGCTGTACAGCTCGGGGACCAGCAGT
CCCTTGCACTTGCCGAAGCACTCGTGGTACACGCGCACGCTGCGCTCGCTGCGCTCCAGG
CCCAGCGCCAGGCTGGCGGCCAGCTCCTGCTTGCAGGGCGGCGGGTAGGCGCCGCCGTAG
AGCAGCGCGTTGCACAGGCGCTCGGCGTCCGTCTTGGTGATGAGCCCGCACGAGGGCGCC
GAGAAGGGCAGGATGCCCATGACTTTGAGGATCTCCAGGTGGTCGGCCGTGGAGCGCGAG
CAGTAGATGTGCAGCTCGTCGCACACCGAGTTGATCTGCTGCAGCGAGAAGTCGCGCAGC
ACCGAGTTGAGGATCTGCGGCAGACACAGGCGCTTCTCGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTCCTTGACGTCGTCCAGGCATCTGCCGAGGCGCGCCTGCTCCTCCTTGCCGGTGTAG
TCCTGGCTCAGCAGGATGTAGGCCCGCCAGTTGGCCGAGTCGAAGCCCCAGTGGCAGGTC
CGGTTCTCCAGGGCCTTGTGCGAGTGCACCACGAACTTATGCGGTGGGTACAGGAGACGG
CAGTCCAGGCACTGGATGCAGGCGGCGCTCGGGCTGCTGTACAGCTCGGGGACCAGCAGT
CCCTTGCACTTGCCGAAGCACTCGTGGTACACGCGCACGCTGCGCTCGCTGCGCTCCAGG
CCCAGCGCCAGGCTGGCGGCCAGCTCCTGCTTGCAGGGCGGCGGGTAGGCGCCGCCGTAG
AGCAGCGCGTTGCACAGGCGCTCGGCGTCCGTCTTGGTGATGAGCCCGCACGAGGGCGCC
GAGAAGGGCAGGATGCCCATGACTTTGAGGATCTCCAGGTGGTCGGCCGTGGAGCGCGAG
CAGTAGATGTGCAGCTCGTCGCACACCGAGTTGATCTGCTGCAGCGAGAAGTCGCGCAGC
ACCGAGTTGAGGATCTGCGGCAGACACAGGCGCTTCTCGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8MHY2_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8MHY2_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               360-479, + strand, RNAz p=0.912904

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               360-479, + strand, RNAz p=0.912904

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-581, gnl|bosTau2|chr16 (36673999-36674579)
               

               
               1-581, gnl|Hg17|chr1 (2193296-2192716)
               

               
               1-581, gnl|Mm7|chr4 (154211134-154211714)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-581, gnl|bosTau2|chr16 (36673999-36674579)
               

               
               1-581, gnl|Hg17|chr1 (2193296-2192716)
               

               
               1-581, gnl|Mm7|chr4 (154211134-154211714)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	1-581, gnl\|bosTau2\|chr16 (36673999-36674579)
	1-581, gnl\|Hg17\|chr1 (2193296-2192716)
	1-581, gnl\|Mm7\|chr4 (154211134-154211714)