Non-Coding RNA Search

rpldo0101_o24.y1

Sequence:


               
               ATGATCAGCTATTTGACTGAAAAATGTGTATTTTTCTAATTCATGTTGATGTAACATTAA
TGCTAATTGAAGAACTAGTATTTAAACTTATTATTTATAAAGGTAAAACATCAAAAAGCT
TATTTATTTTTAAATTTTTTATTTAAAAGAATATTCAGTTTTAATTATTTTTACCCCTCA
AATTATGGGTAAAGTAGGCATTAACAAATTGATGTTTGTCTCCTTTTCCCTCTTTAATTT
TAAAGATATTTAAAGTGATATAGCTAAAAGTGTTTGGATAGTGAATATGTTTTGAATACA
TTGTTTTCTCATAGTTTAGTATATTGACTTTGTACTGTGAAATTGTTTTTCTTATTTCTC
GAATAATCTCAGGATTTGAATGGGGACAGAAAAAACCCCTTAACTTTATTTATGAGACAA
ATTTCCATACAAAACTCAGTCTCCATTACACACATATGTACTCACCCACACACATTCCTT
TTTTAAAAATCAATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGATCAGCTATTTGACTGAAAAATGTGTATTTTTCTAATTCATGTTGATGTAACATTAA
TGCTAATTGAAGAACTAGTATTTAAACTTATTATTTATAAAGGTAAAACATCAAAAAGCT
TATTTATTTTTAAATTTTTTATTTAAAAGAATATTCAGTTTTAATTATTTTTACCCCTCA
AATTATGGGTAAAGTAGGCATTAACAAATTGATGTTTGTCTCCTTTTCCCTCTTTAATTT
TAAAGATATTTAAAGTGATATAGCTAAAAGTGTTTGGATAGTGAATATGTTTTGAATACA
TTGTTTTCTCATAGTTTAGTATATTGACTTTGTACTGTGAAATTGTTTTTCTTATTTCTC
GAATAATCTCAGGATTTGAATGGGGACAGAAAAAACCCCTTAACTTTATTTATGAGACAA
ATTTCCATACAAAACTCAGTCTCCATTACACACATATGTACTCACCCACACACATTCCTT
TTTTAAAAATCAATTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               154-272, - strand, RNAz p=0.814996

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               154-272, - strand, RNAz p=0.814996

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-496, gnl|bosTau2|chr20 (4765311-4765800)
               

               
               1-496, gnl|Hg17|chr5 (70897370-70897853)
               

               
               1-496, gnl|Mm7|chr13 (97092430-97091977)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-496, gnl|bosTau2|chr20 (4765311-4765800)
               

               
               1-496, gnl|Hg17|chr5 (70897370-70897853)
               

               
               1-496, gnl|Mm7|chr13 (97092430-97091977)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ldo (0.0970026)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.0970026)

	1-496, gnl\|bosTau2\|chr20 (4765311-4765800)
	1-496, gnl\|Hg17\|chr5 (70897370-70897853)
	1-496, gnl\|Mm7\|chr13 (97092430-97091977)