Non-Coding RNA Search

rpldo0103_i20.y1

Sequence:


               
               CCTAGAGTAGAGTGCTCTTACCAGGAAAAAAGTTAAGTATGGTAGAATATCCTAGCATGA
GAACTCTTTTGAACATGACACGGAATTTTGACAGGGTTTATACAGTGTGAATTTTTTTAT
TCGAGGTTTGTTACTTAGTGTTGATTTAAAATTTCAAGGAAGGAATAGGAACATTCTAGC
CAAGGAGAACTGCATAGTCATTTTTGCTGCTAATTTAAGCATGCATTTTTTCACAGCTAA
AAGTCCTTTTTAAGTTTAGTTACAACGAGAGGCCATTTTTTCTAGAGAGGTAACATTTTC
CTAAGATGGAAAAGAGGACAGATCCACTAAAAACAAACAAACAAACAAAAACCCTTAATT
AAGTGTGCCTTCTTTCTTAAATTATAGGAATAATAATTAGTCAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTAGAGTAGAGTGCTCTTACCAGGAAAAAAGTTAAGTATGGTAGAATATCCTAGCATGA
GAACTCTTTTGAACATGACACGGAATTTTGACAGGGTTTATACAGTGTGAATTTTTTTAT
TCGAGGTTTGTTACTTAGTGTTGATTTAAAATTTCAAGGAAGGAATAGGAACATTCTAGC
CAAGGAGAACTGCATAGTCATTTTTGCTGCTAATTTAAGCATGCATTTTTTCACAGCTAA
AAGTCCTTTTTAAGTTTAGTTACAACGAGAGGCCATTTTTTCTAGAGAGGTAACATTTTC
CTAAGATGGAAAAGAGGACAGATCCACTAAAAACAAACAAACAAACAAAAACCCTTAATT
AAGTGTGCCTTCTTTCTTAAATTATAGGAATAATAATTAGTCAAAAG

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-406, gnl|bosTau2|chr3 (57864212-57863816)
               

               
               1-406, gnl|canFam2|chr5 (55815387-55814787)
               

               
               1-406, gnl|dasNov1|scaffold_69141 (2263-2839)
               

               
               1-406, gnl|echTel1|scaffold_309257 (34367-34970)
               

               
               1-406, gnl|hg17|chr1 (56890970-56891581)
               

               
               1-406, gnl|Hg17|chr1 (56891199-56891612)
               

               
               1-406, gnl|mm7|chr4 (104407619-104407025)
               

               
               1-406, gnl|Mm7|chr4 (104407399-104406999)
               

               
               1-406, gnl|monDom2|scaffold_40 (19021399-19020801)
               

               
               1-406, gnl|oryCun1|scaffold_182432 (17436-18056)
               

               
               1-406, gnl|panTro1|chr1 (55231561-55232160)
               

               
               1-406, gnl|rheMac2|chr1 (59582899-59583519)
               

               
               1-406, gnl|rn3|chr5 (126008946-126008357)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-406, gnl|bosTau2|chr3 (57864212-57863816)
               

               
               1-406, gnl|canFam2|chr5 (55815387-55814787)
               

               
               1-406, gnl|dasNov1|scaffold_69141 (2263-2839)
               

               
               1-406, gnl|echTel1|scaffold_309257 (34367-34970)
               

               
               1-406, gnl|hg17|chr1 (56890970-56891581)
               

               
               1-406, gnl|Hg17|chr1 (56891199-56891612)
               

               
               1-406, gnl|mm7|chr4 (104407619-104407025)
               

               
               1-406, gnl|Mm7|chr4 (104407399-104406999)
               

               
               1-406, gnl|monDom2|scaffold_40 (19021399-19020801)
               

               
               1-406, gnl|oryCun1|scaffold_182432 (17436-18056)
               

               
               1-406, gnl|panTro1|chr1 (55231561-55232160)
               

               
               1-406, gnl|rheMac2|chr1 (59582899-59583519)
               

               
               1-406, gnl|rn3|chr5 (126008946-126008357)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ldo (0.0970026)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.0970026)

	1-406, gnl\|bosTau2\|chr3 (57864212-57863816)
	1-406, gnl\|canFam2\|chr5 (55815387-55814787)
	1-406, gnl\|dasNov1\|scaffold_69141 (2263-2839)
	1-406, gnl\|echTel1\|scaffold_309257 (34367-34970)
	1-406, gnl\|hg17\|chr1 (56890970-56891581)
	1-406, gnl\|Hg17\|chr1 (56891199-56891612)
	1-406, gnl\|mm7\|chr4 (104407619-104407025)
	1-406, gnl\|Mm7\|chr4 (104407399-104406999)
	1-406, gnl\|monDom2\|scaffold_40 (19021399-19020801)
	1-406, gnl\|oryCun1\|scaffold_182432 (17436-18056)
	1-406, gnl\|panTro1\|chr1 (55231561-55232160)
	1-406, gnl\|rheMac2\|chr1 (59582899-59583519)
	1-406, gnl\|rn3\|chr5 (126008946-126008357)