Non-Coding RNA Search

rpldo0104_p2.y1

Sequence:


               
               CTTGCCACATTCATATCCTCCGTCAACATTGCAGGTGGCTTTCTGGTGACTCAGAGAATG
CTGGACATGTTCAAGCGTCCCACTGACCCCCCAGAATACAATTACCTGTATCTGCTCCCT
GCGGGTACCTTTGTTGGAGGATATTTAGCTGCCCTCTACAGTGGTTATAACATTGAACAA
ATTATGTACCTGGGCTCCGGCCTGTGCTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGCCACATTCATATCCTCCGTCAACATTGCAGGTGGCTTTCTGGTGACTCAGAGAATG
CTGGACATGTTCAAGCGTCCCACTGACCCCCCAGAATACAATTACCTGTATCTGCTCCCT
GCGGGTACCTTTGTTGGAGGATATTTAGCTGCCCTCTACAGTGGTTATAACATTGAACAA
ATTATGTACCTGGGCTCCGGCCTGTGCTGTG

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

Help | Less info


               
               33-179, gnl|bosTau2|chr20 (16793163-16793017)
               

               
               33-179, gnl|canFam2|chr4 (69589720-69589530)
               

               
               33-179, gnl|danRer3|chr21 (10501260-10501079)
               

               
               33-179, gnl|dasNov1|scaffold_3131 (24949-25140)
               

               
               33-179, gnl|fr1|chrUn (202288726-202288908)
               

               
               33-179, gnl|galGal2|chrZ (6831291-6831482)
               

               
               33-179, gnl|hg17|chr5 (43687565-43687754)
               

               
               33-179, gnl|Hg17|chr5 (43687596-43687742)
               

               
               33-179, gnl|loxAfr1|scaffold_7147 (33443-33249)
               

               
               33-179, gnl|mm7|chr13 (116583911-116583718)
               

               
               33-179, gnl|Mm7|chr13 (116583873-116583727)
               

               
               33-179, gnl|monDom2|scaffold_20 (27061762-27061564)
               

               
               33-179, gnl|oryCun1|scaffold_198254 (9964-9769)
               

               
               33-179, gnl|panTro1|chr4 (72833678-72833489)
               

               
               33-179, gnl|rheMac2|chr6 (43584307-43584496)
               

               
               33-179, gnl|rn3|chr2 (51466088-51465897)
               

               
               33-179, gnl|tetNig1|chr4 (1181576-1181758)
               

               
               33-179, gnl|xenTro1|scaffold_938 (208138-208307)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               33-179, gnl|bosTau2|chr20 (16793163-16793017)
               

               
               33-179, gnl|canFam2|chr4 (69589720-69589530)
               

               
               33-179, gnl|danRer3|chr21 (10501260-10501079)
               

               
               33-179, gnl|dasNov1|scaffold_3131 (24949-25140)
               

               
               33-179, gnl|fr1|chrUn (202288726-202288908)
               

               
               33-179, gnl|galGal2|chrZ (6831291-6831482)
               

               
               33-179, gnl|hg17|chr5 (43687565-43687754)
               

               
               33-179, gnl|Hg17|chr5 (43687596-43687742)
               

               
               33-179, gnl|loxAfr1|scaffold_7147 (33443-33249)
               

               
               33-179, gnl|mm7|chr13 (116583911-116583718)
               

               
               33-179, gnl|Mm7|chr13 (116583873-116583727)
               

               
               33-179, gnl|monDom2|scaffold_20 (27061762-27061564)
               

               
               33-179, gnl|oryCun1|scaffold_198254 (9964-9769)
               

               
               33-179, gnl|panTro1|chr4 (72833678-72833489)
               

               
               33-179, gnl|rheMac2|chr6 (43584307-43584496)
               

               
               33-179, gnl|rn3|chr2 (51466088-51465897)
               

               
               33-179, gnl|tetNig1|chr4 (1181576-1181758)
               

               
               33-179, gnl|xenTro1|scaffold_938 (208138-208307)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ldo (0.0970026)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.0970026)

	33-179, gnl\|bosTau2\|chr20 (16793163-16793017)
	33-179, gnl\|canFam2\|chr4 (69589720-69589530)
	33-179, gnl\|danRer3\|chr21 (10501260-10501079)
	33-179, gnl\|dasNov1\|scaffold_3131 (24949-25140)
	33-179, gnl\|fr1\|chrUn (202288726-202288908)
	33-179, gnl\|galGal2\|chrZ (6831291-6831482)
	33-179, gnl\|hg17\|chr5 (43687565-43687754)
	33-179, gnl\|Hg17\|chr5 (43687596-43687742)
	33-179, gnl\|loxAfr1\|scaffold_7147 (33443-33249)
	33-179, gnl\|mm7\|chr13 (116583911-116583718)
	33-179, gnl\|Mm7\|chr13 (116583873-116583727)
	33-179, gnl\|monDom2\|scaffold_20 (27061762-27061564)
	33-179, gnl\|oryCun1\|scaffold_198254 (9964-9769)
	33-179, gnl\|panTro1\|chr4 (72833678-72833489)
	33-179, gnl\|rheMac2\|chr6 (43584307-43584496)
	33-179, gnl\|rn3\|chr2 (51466088-51465897)
	33-179, gnl\|tetNig1\|chr4 (1181576-1181758)
	33-179, gnl\|xenTro1\|scaffold_938 (208138-208307)