rpldo0104_p3.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACCGCGAGAAGATGACTCAGATCATGTTTGAGACCTTCAACGTGCCCGCCATGTACGTG GCCATCCAGGCAGTGCTGTCCCTCTACGCCTCCGGCCGTACCACCGGCATCGTGCTCGAC TCTGGCGACGGCGTCACCCACAACGTGCCCATCTATGAGGGCTACGCGCTGCCACACGCC ATCATGCGCCTGGACCTGGCCGGCCGCGATCTCACCGACTACCTGATGAAGATCCTCACC GAGCGTGGCTACTCCTTCGTGACCACAGCTGAGCGCGAGATCGTGCGCGACATCAAGGAG AAGCTGTGCTACGTGGCCCTGGACTTCGAGAACGAGATGGCCACCGCCGCCTCCTCCTCC TCCCTGGAGAAGAGCTACGAGCTGCCAGACGGCCAGGTCATCACCATCGGCAACGAGCGC TTCCGCTGCCCGGAAACGCTCTTCCAGCCCTCCTTCATCGGCATGGAGTCGGCGGGCATC CATGAGACTACCTACAACAGCATCATGAAGTGCGACATCGATATCAGGAAGGACCTGTAT GCCAACAATGTCATGTCAGGGGGCACCACCATGTACCCGGGCATCGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACCGCGAGAAGATGACTCAGATCATGTTTGAGACCTTCAACGTGCCCGCCATGTACGTG GCCATCCAGGCAGTGCTGTCCCTCTACGCCTCCGGCCGTACCACCGGCATCGTGCTCGAC TCTGGCGACGGCGTCACCCACAACGTGCCCATCTATGAGGGCTACGCGCTGCCACACGCC ATCATGCGCCTGGACCTGGCCGGCCGCGATCTCACCGACTACCTGATGAAGATCCTCACC GAGCGTGGCTACTCCTTCGTGACCACAGCTGAGCGCGAGATCGTGCGCGACATCAAGGAG AAGCTGTGCTACGTGGCCCTGGACTTCGAGAACGAGATGGCCACCGCCGCCTCCTCCTCC TCCCTGGAGAAGAGCTACGAGCTGCCAGACGGCCAGGTCATCACCATCGGCAACGAGCGC TTCCGCTGCCCGGAAACGCTCTTCCAGCCCTCCTTCATCGGCATGGAGTCGGCGGGCATC CATGAGACTACCTACAACAGCATCATGAAGTGCGACATCGATATCAGGAAGGACCTGTAT GCCAACAATGTCATGTCAGGGGGCACCACCATGTACCCGGGCATCGCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 266-378, + strand, RNAz p=0.849393 | |
| 344-468, - strand, RNAz p=0.802462 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 266-378, + strand, RNAz p=0.849393 | |
| 344-468, - strand, RNAz p=0.802462 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-107, gnl|bosTau2|chr10 (19086591-19086485) | |
| 1-107, gnl|canFam2|chr30 (5506751-5507104) | |
| 1-107, gnl|dasNov1|scaffold_19757 (44022-43669) | |
| 1-107, gnl|echTel1|scaffold_318944 (3386-3034) | |
| 1-107, gnl|fr1|chrUn (63305598-63305946) | |
| 1-107, gnl|galGal2|chr5 (29145784-29145442) | |
| 1-107, gnl|hg17|chr15 (32872717-32873069) | |
| 1-107, gnl|Hg17|chr15 (32872843-32872737) | |
| 1-107, gnl|loxAfr1|scaffold_10024 (29037-28725) | |
| 1-107, gnl|mm7|chr2 (113791108-113791460) | |
| 1-107, gnl|Mm7|chr2 (113791234-113791128) | |
| 1-107, gnl|monDom2|scaffold_12 (9572456-9572112) | |
| 1-107, gnl|oryCun1|scaffold_179293 (445-93) | |
| 1-107, gnl|panTro1|chr16 (32653340-32653692) | |
| 1-107, gnl|rheMac2|chr7 (13132136-13132488) | |
| 1-107, gnl|rn3|chr3 (99800397-99800748) | |
| 1-107, gnl|tetNig1|chr10 (7897220-7896871) | |
| 1-107, gnl|xenTro1|scaffold_199 (677786-677445) | |
| 265-468, gnl|bosTau2|chr26 (5412437-5412234) | |
| 265-468, gnl|Hg17|chr10 (90689439-90689236) | |
| 265-468, gnl|Mm7|chr19 (33946340-33946137) | |
| 266-461, gnl|bosTau2|chr10 (19085485-19085290) | |
| 266-461, gnl|canFam2|chr30 (5505628-5505833) | |
| 266-461, gnl|danRer3|chr14 (32886032-32885827) | |
| 266-461, gnl|dasNov1|scaffold_1043 (13637-13827) | |
| 266-461, gnl|echTel1|scaffold_318944 (4473-4268) | |
| 266-461, gnl|fr1|chrUn (63305079-63305280) | |
| 266-461, gnl|galGal2|chr5 (29146862-29146670) | |
| 266-461, gnl|hg17|chr15 (32871574-32871779) | |
| 266-461, gnl|Hg17|chr15 (32871777-32871582) | |
| 266-461, gnl|loxAfr1|scaffold_10024 (29791-29599) | |
| 266-461, gnl|mm7|chr2 (113790000-113790205) | |
| 266-461, gnl|Mm7|chr2 (113790203-113790008) | |
| 266-461, gnl|monDom2|scaffold_12 (9573880-9573675) | |
| 266-461, gnl|oryCun1|scaffold_214311 (43778-43970) | |
| 266-461, gnl|panTro1|chr16 (32652195-32652400) | |
| 266-461, gnl|rheMac2|chr7 (13130989-13131194) | |
| 266-461, gnl|rn3|chr3 (99799298-99799503) | |
| 266-461, gnl|tetNig1|chr10 (7897776-7897575) | |
| 266-461, gnl|xenTro1|scaffold_199 (679801-679596) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-107, gnl|bosTau2|chr10 (19086591-19086485) | |
| 1-107, gnl|canFam2|chr30 (5506751-5507104) | |
| 1-107, gnl|dasNov1|scaffold_19757 (44022-43669) | |
| 1-107, gnl|echTel1|scaffold_318944 (3386-3034) | |
| 1-107, gnl|fr1|chrUn (63305598-63305946) | |
| 1-107, gnl|galGal2|chr5 (29145784-29145442) | |
| 1-107, gnl|hg17|chr15 (32872717-32873069) | |
| 1-107, gnl|Hg17|chr15 (32872843-32872737) | |
| 1-107, gnl|loxAfr1|scaffold_10024 (29037-28725) | |
| 1-107, gnl|mm7|chr2 (113791108-113791460) | |
| 1-107, gnl|Mm7|chr2 (113791234-113791128) | |
| 1-107, gnl|monDom2|scaffold_12 (9572456-9572112) | |
| 1-107, gnl|oryCun1|scaffold_179293 (445-93) | |
| 1-107, gnl|panTro1|chr16 (32653340-32653692) | |
| 1-107, gnl|rheMac2|chr7 (13132136-13132488) | |
| 1-107, gnl|rn3|chr3 (99800397-99800748) | |
| 1-107, gnl|tetNig1|chr10 (7897220-7896871) | |
| 1-107, gnl|xenTro1|scaffold_199 (677786-677445) | |
| 265-468, gnl|bosTau2|chr26 (5412437-5412234) | |
| 265-468, gnl|Hg17|chr10 (90689439-90689236) | |
| 265-468, gnl|Mm7|chr19 (33946340-33946137) | |
| 266-461, gnl|bosTau2|chr10 (19085485-19085290) | |
| 266-461, gnl|canFam2|chr30 (5505628-5505833) | |
| 266-461, gnl|danRer3|chr14 (32886032-32885827) | |
| 266-461, gnl|dasNov1|scaffold_1043 (13637-13827) | |
| 266-461, gnl|echTel1|scaffold_318944 (4473-4268) | |
| 266-461, gnl|fr1|chrUn (63305079-63305280) | |
| 266-461, gnl|galGal2|chr5 (29146862-29146670) | |
| 266-461, gnl|hg17|chr15 (32871574-32871779) | |
| 266-461, gnl|Hg17|chr15 (32871777-32871582) | |
| 266-461, gnl|loxAfr1|scaffold_10024 (29791-29599) | |
| 266-461, gnl|mm7|chr2 (113790000-113790205) | |
| 266-461, gnl|Mm7|chr2 (113790203-113790008) | |
| 266-461, gnl|monDom2|scaffold_12 (9573880-9573675) | |
| 266-461, gnl|oryCun1|scaffold_214311 (43778-43970) | |
| 266-461, gnl|panTro1|chr16 (32652195-32652400) | |
| 266-461, gnl|rheMac2|chr7 (13130989-13131194) | |
| 266-461, gnl|rn3|chr3 (99799298-99799503) | |
| 266-461, gnl|tetNig1|chr10 (7897776-7897575) | |
| 266-461, gnl|xenTro1|scaffold_199 (679801-679596) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ldo (0.0970026) |