rpldo0109_h15.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCTCACCAACAACGGCAGCCATGCTTGCCAGACTATCCAGGTGCCAATGATACTAAATT CACTACAGAGAAGTGTACAGGCTGTGTTAGTGGGAAAAATTCAGATTCAGGACTGGTTTA GCAACGGCATAAAGAAAGCAGCTTTAATGCACAAGTGGCCATTAAAAGAAATATCTGTTG ATGAAGATGATCAATGTCTACTTCAGAATGATGGATTTTTTCTTTATCTGTTATGCAAGG ATGGATTATACAAAATAGGCTCTGGATACAGTGGAACCGTTAGGGGCCATATATATAATT CTACATCTCGCATCAGAAACAGAAAAGAAAAAAAGTCCTGGTTAGGGTATGCTCAGGGTT ATTTATTGTATAGAGATGTGAATAACCACAGCATGACAGCCATAAGAATAAGCCCTGAAA CATTGGAACAGGATGGTACTGTAATGTTACCAGATTGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCTCACCAACAACGGCAGCCATGCTTGCCAGACTATCCAGGTGCCAATGATACTAAATT CACTACAGAGAAGTGTACAGGCTGTGTTAGTGGGAAAAATTCAGATTCAGGACTGGTTTA GCAACGGCATAAAGAAAGCAGCTTTAATGCACAAGTGGCCATTAAAAGAAATATCTGTTG ATGAAGATGATCAATGTCTACTTCAGAATGATGGATTTTTTCTTTATCTGTTATGCAAGG ATGGATTATACAAAATAGGCTCTGGATACAGTGGAACCGTTAGGGGCCATATATATAATT CTACATCTCGCATCAGAAACAGAAAAGAAAAAAAGTCCTGGTTAGGGTATGCTCAGGGTT ATTTATTGTATAGAGATGTGAATAACCACAGCATGACAGCCATAAGAATAAGCCCTGAAA CATTGGAACAGGATGGTACTGTAATGTTACCAGATTGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 119-238, - strand, RNAz p=0.672076 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 119-238, - strand, RNAz p=0.672076 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 40-285, gnl|bosTau2|chr12 (25964738-25964983) | |
| 40-285, gnl|canFam2|chr22 (33766063-33766322) | |
| 40-285, gnl|danRer3|chr7 (47581645-47581906) | |
| 40-285, gnl|dasNov1|scaffold_30755 (2826-3083) | |
| 40-285, gnl|echTel1|scaffold_266656 (2961-3219) | |
| 40-285, gnl|fr1|chrUn (155254422-155254668) | |
| 40-285, gnl|galGal2|chr1 (150993220-150992959) | |
| 40-285, gnl|hg17|chr13 (76742365-76742623) | |
| 40-285, gnl|Hg17|chr13 (76742676-76742431) | |
| 40-285, gnl|loxAfr1|scaffold_97209 (1472-1731) | |
| 40-285, gnl|mm7|chr14 (97729504-97729762) | |
| 40-285, gnl|Mm7|chr14 (97729815-97729570) | |
| 40-285, gnl|monDom2|scaffold_8 (14907022-14907269) | |
| 40-285, gnl|oryCun1|scaffold_146351 (4171-4427) | |
| 40-285, gnl|panTro1|chr14 (59340072-59340330) | |
| 40-285, gnl|rheMac2|chr17 (57760559-57760817) | |
| 40-285, gnl|rn3|chr15 (87330280-87330538) | |
| 40-285, gnl|tetNig1|chr2 (8219303-8219572) | |
| 40-285, gnl|xenTro1|scaffold_141 (1766846-1766582) | |
| 353-453, gnl|bosTau2|chr12 (25966764-25966864) | |
| 353-453, gnl|Hg17|chr13 (76740077-76739977) | |
| 353-453, gnl|Mm7|chr14 (97727651-97727551) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 40-285, gnl|bosTau2|chr12 (25964738-25964983) | |
| 40-285, gnl|canFam2|chr22 (33766063-33766322) | |
| 40-285, gnl|danRer3|chr7 (47581645-47581906) | |
| 40-285, gnl|dasNov1|scaffold_30755 (2826-3083) | |
| 40-285, gnl|echTel1|scaffold_266656 (2961-3219) | |
| 40-285, gnl|fr1|chrUn (155254422-155254668) | |
| 40-285, gnl|galGal2|chr1 (150993220-150992959) | |
| 40-285, gnl|hg17|chr13 (76742365-76742623) | |
| 40-285, gnl|Hg17|chr13 (76742676-76742431) | |
| 40-285, gnl|loxAfr1|scaffold_97209 (1472-1731) | |
| 40-285, gnl|mm7|chr14 (97729504-97729762) | |
| 40-285, gnl|Mm7|chr14 (97729815-97729570) | |
| 40-285, gnl|monDom2|scaffold_8 (14907022-14907269) | |
| 40-285, gnl|oryCun1|scaffold_146351 (4171-4427) | |
| 40-285, gnl|panTro1|chr14 (59340072-59340330) | |
| 40-285, gnl|rheMac2|chr17 (57760559-57760817) | |
| 40-285, gnl|rn3|chr15 (87330280-87330538) | |
| 40-285, gnl|tetNig1|chr2 (8219303-8219572) | |
| 40-285, gnl|xenTro1|scaffold_141 (1766846-1766582) | |
| 353-453, gnl|bosTau2|chr12 (25966764-25966864) | |
| 353-453, gnl|Hg17|chr13 (76740077-76739977) | |
| 353-453, gnl|Mm7|chr14 (97727651-97727551) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ldo (0.0970026) |