Non-Coding RNA Search

rpldo0111_g11.y1

Sequence:


               
               ACGATTATTGCCATTTTCTACAAGTCACTGGGCAAAAAGAGAGAGCCACCTCGATCCTGA
GAGAGTCCCTGGAGGCTAAAGTGGCAGTGTTTGGTGATCTCAGTCCTGAGGTGGCAGAGA
CTTACCGGCTCCTGGGTGGGGCCGACCTGGCACAAGGGAACCAGAGCGGGGCCGACAAGA
AATTGAAGAAGGTAAAGCTGCAGTGCAGCTAACACAGAGGAAAGCTGTCCCATCCTTCAC
CACAGGTCACTTTCTATCCCTCCACTGTGTTCTTTTTAAATGCAGCATTAAGAACTTACA
AAACATgagttcccattgtggctcagtggtaacaaacccaactagtatccatgaggacat
gggtttcatccctggccttgctcagtgggttaaggatccaatgtgactgtgagctatggt
gtagtttgcagatgtggctcagatcctgcattgctgtgggcccttgtaggccagcagctg
cagctctgatttgaaccctagcctgggaacttccatatgccctgggtgtggccctaaaaa
gCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGATTATTGCCATTTTCTACAAGTCACTGGGCAAAAAGAGAGAGCCACCTCGATCCTGA
GAGAGTCCCTGGAGGCTAAAGTGGCAGTGTTTGGTGATCTCAGTCCTGAGGTGGCAGAGA
CTTACCGGCTCCTGGGTGGGGCCGACCTGGCACAAGGGAACCAGAGCGGGGCCGACAAGA
AATTGAAGAAGGTAAAGCTGCAGTGCAGCTAACACAGAGGAAAGCTGTCCCATCCTTCAC
CACAGGTCACTTTCTATCCCTCCACTGTGTTCTTTTTAAATGCAGCATTAAGAACTTACA
AAACATgagttcccattgtggctcagtggtaacaaacccaactagtatccatgaggacat
gggtttcatccctggccttgctcagtgggttaaggatccaatgtgactgtgagctatggt
gtagtttgcagatgtggctcagatcctgcattgctgtgggcccttgtaggccagcagctg
cagctctgatttgaaccctagcctgggaacttccatatgccctgggtgtggccctaaaaa
gCAT

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               40-238, gnl|bosTau2|chr21 (2359565-2359367)
               

               
               40-238, gnl|canFam2|chr3 (44434747-44434556)
               

               
               40-238, gnl|dasNov1|scaffold_79994 (52-257)
               

               
               40-238, gnl|echTel1|scaffold_284464 (7957-8153)
               

               
               40-238, gnl|hg17|chr15 (97513757-97513958)
               

               
               40-238, gnl|Hg17|chr15 (97514027-97513828)
               

               
               40-238, gnl|mm7|chr7 (63567630-63567402)
               

               
               40-238, gnl|Mm7|chr7 (63567331-63567569)
               

               
               40-238, gnl|monDom2|scaffold_12 (61731166-61730991)
               

               
               40-238, gnl|panTro1|chr16 (98586455-98586656)
               

               
               40-238, gnl|rheMac2|chr7 (79186583-79186784)
               

               
               40-238, gnl|rn3|chr1 (122533204-122533007)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-238, gnl|bosTau2|chr21 (2359565-2359367)
               

               
               40-238, gnl|canFam2|chr3 (44434747-44434556)
               

               
               40-238, gnl|dasNov1|scaffold_79994 (52-257)
               

               
               40-238, gnl|echTel1|scaffold_284464 (7957-8153)
               

               
               40-238, gnl|hg17|chr15 (97513757-97513958)
               

               
               40-238, gnl|Hg17|chr15 (97514027-97513828)
               

               
               40-238, gnl|mm7|chr7 (63567630-63567402)
               

               
               40-238, gnl|Mm7|chr7 (63567331-63567569)
               

               
               40-238, gnl|monDom2|scaffold_12 (61731166-61730991)
               

               
               40-238, gnl|panTro1|chr16 (98586455-98586656)
               

               
               40-238, gnl|rheMac2|chr7 (79186583-79186784)
               

               
               40-238, gnl|rn3|chr1 (122533204-122533007)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ldo (0.0970026)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.0970026)

	40-238, gnl\|bosTau2\|chr21 (2359565-2359367)
	40-238, gnl\|canFam2\|chr3 (44434747-44434556)
	40-238, gnl\|dasNov1\|scaffold_79994 (52-257)
	40-238, gnl\|echTel1\|scaffold_284464 (7957-8153)
	40-238, gnl\|hg17\|chr15 (97513757-97513958)
	40-238, gnl\|Hg17\|chr15 (97514027-97513828)
	40-238, gnl\|mm7\|chr7 (63567630-63567402)
	40-238, gnl\|Mm7\|chr7 (63567331-63567569)
	40-238, gnl\|monDom2\|scaffold_12 (61731166-61730991)
	40-238, gnl\|panTro1\|chr16 (98586455-98586656)
	40-238, gnl\|rheMac2\|chr7 (79186583-79186784)
	40-238, gnl\|rn3\|chr1 (122533204-122533007)