Non-Coding RNA Search

rpldo0111_o9.y1

Sequence:


               
               GGTGGCTCTAACCTGGGACCTTAAGGATGCATAAGCATGAGCCAGGTGAGGAAGGGCAAG
AAGGGGGTACCAGGAGGAAAGAATAGCAGGAACTGGCCGGAGAAGGCTGGAGCTCTTGGT
ATGAGTGCTGAGGATGGAGAAGCAAGGAGGCAGAGGCAGGGAGGGAAGCCCTCTCAGGTA
TGTTCAGGAACTGGAACTTTAATTCCTGCAGTTGGTTGAGCTAGACTTTCTTGACTTATT
GATATTGTCAATGTGACTTTTAAAACTTACATATACCTGggagttcccattgtgactcag
tggtaacaaagccagtaagtatccatgaagatgtgggttcaatccctggcctcactcggt
gggttaaggatccagcattgccaagagctgtggtataggtcatagatgtggctcagatcc
caggttgctgtggctgtggtgtaggctggca

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGGCTCTAACCTGGGACCTTAAGGATGCATAAGCATGAGCCAGGTGAGGAAGGGCAAG
AAGGGGGTACCAGGAGGAAAGAATAGCAGGAACTGGCCGGAGAAGGCTGGAGCTCTTGGT
ATGAGTGCTGAGGATGGAGAAGCAAGGAGGCAGAGGCAGGGAGGGAAGCCCTCTCAGGTA
TGTTCAGGAACTGGAACTTTAATTCCTGCAGTTGGTTGAGCTAGACTTTCTTGACTTATT
GATATTGTCAATGTGACTTTTAAAACTTACATATACCTGggagttcccattgtgactcag
tggtaacaaagccagtaagtatccatgaagatgtgggttcaatccctggcctcactcggt
gggttaaggatccagcattgccaagagctgtggtataggtcatagatgtggctcagatcc
caggttgctgtggctgtggtgtaggctggca

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               69-188, + strand, RNAz p=0.983058

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               69-188, + strand, RNAz p=0.983058

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-278, gnl|bosTau2|chr17 (32967848-32968125)
               

               
               1-278, gnl|Hg17|chr12 (116308250-116307843)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-278, gnl|bosTau2|chr17 (32967848-32968125)
               

               
               1-278, gnl|Hg17|chr12 (116308250-116307843)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ldo (0.0970026)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.0970026)

	1-278, gnl\|bosTau2\|chr17 (32967848-32968125)
	1-278, gnl\|Hg17\|chr12 (116308250-116307843)