Non-Coding RNA Search

rpldo0118_i5.y1

Sequence:


               
               TGAAACTTTACCAAGGTCTTCAACTAAATCTTTCTAACCTGCAGGATTAGAACTTGAGAC
TGACTTCAGTCAACTGCAAGTGTGCAGATTCTTTCTCTGATCCCCTTGTTTTAGAATTCT
GTTTCTACAATATCCTGAGAGTTTCCCAACCTTTCTCCTAATGAGCTGTTTTAAGTTGTG
TGTGAAAGCACATATGAGGTTGGTTTGCAGGCTTGTTGGACACACGTAGACAGCTTGCAG
TTGACCTTATGCTGACTCAGGCCAAGAGGAAGCAGCAGTAACCAAGGAGGAACCCCTCCT
CCCTCAGTTCACACCCAGGTTGCCAAGGGTGGGCAGAGTGAGAGGGCTTGGGATGCAAGG
CTTTGTCTGCTGTTTGGTTATTTTTAATTAAAATTTAATTTAAAAATCAAAAACTACCTG
TGTTAAAAGTAGAACTGAAAGTGTGATACCAGTGCATTCTAACAAAGTTTTGCAATGAAC
AGGGGAAAAGAAAAATTCAAGTACTTCCTAAGTGTAGTTTTTTTTTTTTTTTTCCAGTCG
AACCCCTTAGTGAACCCCCTGACCTTCTTTAAACCTGTCTTGTCCAGTTTAGTCAGAACT
TTCCACAAACAATTGCATGGGTATAAGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAACTTTACCAAGGTCTTCAACTAAATCTTTCTAACCTGCAGGATTAGAACTTGAGAC
TGACTTCAGTCAACTGCAAGTGTGCAGATTCTTTCTCTGATCCCCTTGTTTTAGAATTCT
GTTTCTACAATATCCTGAGAGTTTCCCAACCTTTCTCCTAATGAGCTGTTTTAAGTTGTG
TGTGAAAGCACATATGAGGTTGGTTTGCAGGCTTGTTGGACACACGTAGACAGCTTGCAG
TTGACCTTATGCTGACTCAGGCCAAGAGGAAGCAGCAGTAACCAAGGAGGAACCCCTCCT
CCCTCAGTTCACACCCAGGTTGCCAAGGGTGGGCAGAGTGAGAGGGCTTGGGATGCAAGG
CTTTGTCTGCTGTTTGGTTATTTTTAATTAAAATTTAATTTAAAAATCAAAAACTACCTG
TGTTAAAAGTAGAACTGAAAGTGTGATACCAGTGCATTCTAACAAAGTTTTGCAATGAAC
AGGGGAAAAGAAAAATTCAAGTACTTCCTAAGTGTAGTTTTTTTTTTTTTTTTCCAGTCG
AACCCCTTAGTGAACCCCCTGACCTTCTTTAAACCTGTCTTGTCCAGTTTAGTCAGAACT
TTCCACAAACAATTGCATGGGTATAAGAGA

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               71-194, gnl|bosTau2|chr27 (14984483-14984606)
               

               
               71-194, gnl|canFam2|chr16 (38334528-38334204)
               

               
               71-194, gnl|dasNov1|scaffold_1787 (15853-16123)
               

               
               71-194, gnl|echTel1|scaffold_310389 (71715-71463)
               

               
               71-194, gnl|hg17|chr8 (9042254-9042515)
               

               
               71-194, gnl|Hg17|chr8 (9042514-9042385)
               

               
               71-194, gnl|mm7|chr8 (34144441-34144160)
               

               
               71-194, gnl|oryCun1|scaffold_207768 (408-689)
               

               
               71-194, gnl|panTro1|chr7 (9669122-9669368)
               

               
               71-194, gnl|rheMac2|chr8 (11568434-11568169)
               

               
               71-194, gnl|rn3|chr16 (60561541-60561830)
               


               
               223-626, gnl|bosTau2|chr27 (14984601-14985019)
               

               
               223-626, gnl|Hg17|chr8 (9042390-9041682)
               

               
               223-626, gnl|Mm7|chr8 (34144290-34144652)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               71-194, gnl|bosTau2|chr27 (14984483-14984606)
               

               
               71-194, gnl|canFam2|chr16 (38334528-38334204)
               

               
               71-194, gnl|dasNov1|scaffold_1787 (15853-16123)
               

               
               71-194, gnl|echTel1|scaffold_310389 (71715-71463)
               

               
               71-194, gnl|hg17|chr8 (9042254-9042515)
               

               
               71-194, gnl|Hg17|chr8 (9042514-9042385)
               

               
               71-194, gnl|mm7|chr8 (34144441-34144160)
               

               
               71-194, gnl|oryCun1|scaffold_207768 (408-689)
               

               
               71-194, gnl|panTro1|chr7 (9669122-9669368)
               

               
               71-194, gnl|rheMac2|chr8 (11568434-11568169)
               

               
               71-194, gnl|rn3|chr16 (60561541-60561830)
               


               
               223-626, gnl|bosTau2|chr27 (14984601-14985019)
               

               
               223-626, gnl|Hg17|chr8 (9042390-9041682)
               

               
               223-626, gnl|Mm7|chr8 (34144290-34144652)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ldo (0.0970026)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.0970026)

	71-194, gnl\|bosTau2\|chr27 (14984483-14984606)
	71-194, gnl\|canFam2\|chr16 (38334528-38334204)
	71-194, gnl\|dasNov1\|scaffold_1787 (15853-16123)
	71-194, gnl\|echTel1\|scaffold_310389 (71715-71463)
	71-194, gnl\|hg17\|chr8 (9042254-9042515)
	71-194, gnl\|Hg17\|chr8 (9042514-9042385)
	71-194, gnl\|mm7\|chr8 (34144441-34144160)
	71-194, gnl\|oryCun1\|scaffold_207768 (408-689)
	71-194, gnl\|panTro1\|chr7 (9669122-9669368)
	71-194, gnl\|rheMac2\|chr8 (11568434-11568169)
	71-194, gnl\|rn3\|chr16 (60561541-60561830)

	223-626, gnl\|bosTau2\|chr27 (14984601-14985019)
	223-626, gnl\|Hg17\|chr8 (9042390-9041682)
	223-626, gnl\|Mm7\|chr8 (34144290-34144652)