Non-Coding RNA Search

rpldo0118_m2.y1

Sequence:


               
               GAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTACACAAATTAATGACCATTTATTTCC
AAAGGTGACCGCAGAAACCATTTCAGTACAATCAAAAGGTTTTACAAAACAGAAAACATT
ACAAAATGCCCCAAGAGGTGAGCAAACTGGTGGCGGGCACAGAGCACCCAAGAACCAGCT
TGGCAAAAATACTCATCCTGCAGCCTTTTTTGGGGGGAGGGGGAGTGGGGGCACAAAGGC
TGGCTCGAAAGGAAGCCACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTACACAAATTAATGACCATTTATTTCC
AAAGGTGACCGCAGAAACCATTTCAGTACAATCAAAAGGTTTTACAAAACAGAAAACATT
ACAAAATGCCCCAAGAGGTGAGCAAACTGGTGGCGGGCACAGAGCACCCAAGAACCAGCT
TGGCAAAAATACTCATCCTGCAGCCTTTTTTGGGGGGAGGGGGAGTGGGGGCACAAAGGC
TGGCTCGAAAGGAAGCCACTG

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               40-197, gnl|bosTau2|chrX (18760944-18760785)
               

               
               40-197, gnl|canFam2|chrX (86453465-86453718)
               

               
               40-197, gnl|dasNov1|scaffold_6368 (82459-82716)
               

               
               40-197, gnl|galGal2|chr4 (13442265-13442013)
               

               
               40-197, gnl|hg17|chrX (109226755-109227017)
               

               
               40-197, gnl|Hg17|chrX (109227023-109226867)
               

               
               40-197, gnl|loxAfr1|scaffold_10761 (38210-37953)
               

               
               40-197, gnl|mm7|chrX (137502333-137502543)
               

               
               40-197, gnl|Mm7|chrX (137502549-137502404)
               

               
               40-197, gnl|oryCun1|scaffold_179728 (3389-3177)
               

               
               40-197, gnl|rheMac2|chrX (108896388-108896650)
               

               
               40-197, gnl|rn3|chrX (35766563-35766322)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-197, gnl|bosTau2|chrX (18760944-18760785)
               

               
               40-197, gnl|canFam2|chrX (86453465-86453718)
               

               
               40-197, gnl|dasNov1|scaffold_6368 (82459-82716)
               

               
               40-197, gnl|galGal2|chr4 (13442265-13442013)
               

               
               40-197, gnl|hg17|chrX (109226755-109227017)
               

               
               40-197, gnl|Hg17|chrX (109227023-109226867)
               

               
               40-197, gnl|loxAfr1|scaffold_10761 (38210-37953)
               

               
               40-197, gnl|mm7|chrX (137502333-137502543)
               

               
               40-197, gnl|Mm7|chrX (137502549-137502404)
               

               
               40-197, gnl|oryCun1|scaffold_179728 (3389-3177)
               

               
               40-197, gnl|rheMac2|chrX (108896388-108896650)
               

               
               40-197, gnl|rn3|chrX (35766563-35766322)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ldo (0.0970026)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.0970026)

	40-197, gnl\|bosTau2\|chrX (18760944-18760785)
	40-197, gnl\|canFam2\|chrX (86453465-86453718)
	40-197, gnl\|dasNov1\|scaffold_6368 (82459-82716)
	40-197, gnl\|galGal2\|chr4 (13442265-13442013)
	40-197, gnl\|hg17\|chrX (109226755-109227017)
	40-197, gnl\|Hg17\|chrX (109227023-109226867)
	40-197, gnl\|loxAfr1\|scaffold_10761 (38210-37953)
	40-197, gnl\|mm7\|chrX (137502333-137502543)
	40-197, gnl\|Mm7\|chrX (137502549-137502404)
	40-197, gnl\|oryCun1\|scaffold_179728 (3389-3177)
	40-197, gnl\|rheMac2\|chrX (108896388-108896650)
	40-197, gnl\|rn3\|chrX (35766563-35766322)