Non-Coding RNA Search

rpldo0119_b11.y1

Sequence:


               
               AGTTGATGAAAGCGGCGAAATCAGAGCCACTGCGTTCAACGAGCAAGTGGACAAGTTCTT
TCCCCTTATTGACGTGAACAAGGTCTATTACTTCTCTAAAGGCACCCTGAAGATTGCCAA
CAAACAATTTACGGCTGTCAAAAACGACTACGAGATGACCTTCAGTAATGAGACTTCTGT
CATGCCCTGTGAGGACGGCCATCATTTACCCACAGTTCAGTTTGATTTCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTGATGAAAGCGGCGAAATCAGAGCCACTGCGTTCAACGAGCAAGTGGACAAGTTCTT
TCCCCTTATTGACGTGAACAAGGTCTATTACTTCTCTAAAGGCACCCTGAAGATTGCCAA
CAAACAATTTACGGCTGTCAAAAACGACTACGAGATGACCTTCAGTAATGAGACTTCTGT
CATGCCCTGTGAGGACGGCCATCATTTACCCACAGTTCAGTTTGATTTCAC

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               81-231, gnl|bosTau2|chr19 (17471426-17471576)
               

               
               81-231, gnl|canFam2|chr9 (49342137-49342368)
               

               
               81-231, gnl|danRer3|chrNA (108625837-108625630)
               

               
               81-231, gnl|dasNov1|scaffold_18938 (4509-4274)
               

               
               81-231, gnl|echTel1|scaffold_72917 (2243-2011)
               

               
               81-231, gnl|fr1|chrUn (60372456-60372227)
               

               
               81-231, gnl|galGal2|chr19 (5117189-5117417)
               

               
               81-231, gnl|hg17|chr17 (1729242-1729474)
               

               
               81-231, gnl|Hg17|chr17 (1729257-1729407)
               

               
               81-231, gnl|mm7|chr11 (75394763-75394531)
               

               
               81-231, gnl|Mm7|chr11 (75394746-75394596)
               

               
               81-231, gnl|monDom2|scaffold_86 (3050826-3051069)
               

               
               81-231, gnl|oryCun1|scaffold_202098 (84471-84240)
               

               
               81-231, gnl|panTro1|chr19 (1872396-1872628)
               

               
               81-231, gnl|rheMac2|chr16 (1668454-1668686)
               

               
               81-231, gnl|rn3|chr10 (62638749-62638517)
               

               
               81-231, gnl|tetNig1|chr16 (3505216-3505002)
               

               
               81-231, gnl|xenTro1|scaffold_50 (2867006-2866780)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               81-231, gnl|bosTau2|chr19 (17471426-17471576)
               

               
               81-231, gnl|canFam2|chr9 (49342137-49342368)
               

               
               81-231, gnl|danRer3|chrNA (108625837-108625630)
               

               
               81-231, gnl|dasNov1|scaffold_18938 (4509-4274)
               

               
               81-231, gnl|echTel1|scaffold_72917 (2243-2011)
               

               
               81-231, gnl|fr1|chrUn (60372456-60372227)
               

               
               81-231, gnl|galGal2|chr19 (5117189-5117417)
               

               
               81-231, gnl|hg17|chr17 (1729242-1729474)
               

               
               81-231, gnl|Hg17|chr17 (1729257-1729407)
               

               
               81-231, gnl|mm7|chr11 (75394763-75394531)
               

               
               81-231, gnl|Mm7|chr11 (75394746-75394596)
               

               
               81-231, gnl|monDom2|scaffold_86 (3050826-3051069)
               

               
               81-231, gnl|oryCun1|scaffold_202098 (84471-84240)
               

               
               81-231, gnl|panTro1|chr19 (1872396-1872628)
               

               
               81-231, gnl|rheMac2|chr16 (1668454-1668686)
               

               
               81-231, gnl|rn3|chr10 (62638749-62638517)
               

               
               81-231, gnl|tetNig1|chr16 (3505216-3505002)
               

               
               81-231, gnl|xenTro1|scaffold_50 (2867006-2866780)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ldo (0.0970026)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.0970026)

	81-231, gnl\|bosTau2\|chr19 (17471426-17471576)
	81-231, gnl\|canFam2\|chr9 (49342137-49342368)
	81-231, gnl\|danRer3\|chrNA (108625837-108625630)
	81-231, gnl\|dasNov1\|scaffold_18938 (4509-4274)
	81-231, gnl\|echTel1\|scaffold_72917 (2243-2011)
	81-231, gnl\|fr1\|chrUn (60372456-60372227)
	81-231, gnl\|galGal2\|chr19 (5117189-5117417)
	81-231, gnl\|hg17\|chr17 (1729242-1729474)
	81-231, gnl\|Hg17\|chr17 (1729257-1729407)
	81-231, gnl\|mm7\|chr11 (75394763-75394531)
	81-231, gnl\|Mm7\|chr11 (75394746-75394596)
	81-231, gnl\|monDom2\|scaffold_86 (3050826-3051069)
	81-231, gnl\|oryCun1\|scaffold_202098 (84471-84240)
	81-231, gnl\|panTro1\|chr19 (1872396-1872628)
	81-231, gnl\|rheMac2\|chr16 (1668454-1668686)
	81-231, gnl\|rn3\|chr10 (62638749-62638517)
	81-231, gnl\|tetNig1\|chr16 (3505216-3505002)
	81-231, gnl\|xenTro1\|scaffold_50 (2867006-2866780)