Non-Coding RNA Search

rpldo0119_b19.y1

Sequence:


               
               ATTACACAGCCCGGATGAATCTCACTCAGATTTTGGAAACTTCCACTGTCTTTCCTAGTG
CCAATCCAGCAGAATATGATCGATTCCAGCACTTCTATTTATGAATTCCAAACACCATCT
TACCTCACCAAAAGTAATAGCACCGATCAGATCAGTTTTTCTCCTGGAGATAATCAAGCA
CAATCAGAAATTGGAGAGCAACAATTAGATTTCAATAGCACTGTTAAAGACCTGTTGAGT
GGAGACAGCTTGCAAACCAACCAGCAGCTGGTAGGTCAGGTACCATCTGATCTCTCTAAT
CCTGCGTCTGATTTCTCTAGCGATATCAGGTTGTCTTCAGAGCTCTCAGGCAGCATCAAT
GATTTGAACACTTTAGACCCAAATCTACTGTTTGATCCAGGTCGTCAGCAGGGACAAGAT
GATGAAGCCACACTGGAAGAATTAAAGAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTACACAGCCCGGATGAATCTCACTCAGATTTTGGAAACTTCCACTGTCTTTCCTAGTG
CCAATCCAGCAGAATATGATCGATTCCAGCACTTCTATTTATGAATTCCAAACACCATCT
TACCTCACCAAAAGTAATAGCACCGATCAGATCAGTTTTTCTCCTGGAGATAATCAAGCA
CAATCAGAAATTGGAGAGCAACAATTAGATTTCAATAGCACTGTTAAAGACCTGTTGAGT
GGAGACAGCTTGCAAACCAACCAGCAGCTGGTAGGTCAGGTACCATCTGATCTCTCTAAT
CCTGCGTCTGATTTCTCTAGCGATATCAGGTTGTCTTCAGAGCTCTCAGGCAGCATCAAT
GATTTGAACACTTTAGACCCAAATCTACTGTTTGATCCAGGTCGTCAGCAGGGACAAGAT
GATGAAGCCACACTGGAAGAATTAAAGAATG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|50810830|ref|XP_429091.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|50810830|ref|XP_429091.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               200-451, - strand, RNAz p=0.994035

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-451, - strand, RNAz p=0.994035

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-451, gnl|bosTau2|chr10 (39423994-39423545)
               

               
               1-451, gnl|Hg17|chr15 (54173391-54172942)
               

               
               1-451, gnl|Mm7|chr9 (72652144-72652593)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-451, gnl|bosTau2|chr10 (39423994-39423545)
               

               
               1-451, gnl|Hg17|chr15 (54173391-54172942)
               

               
               1-451, gnl|Mm7|chr9 (72652144-72652593)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ldo (0.0970026)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.0970026)

	1-451, gnl\|bosTau2\|chr10 (39423994-39423545)
	1-451, gnl\|Hg17\|chr15 (54173391-54172942)
	1-451, gnl\|Mm7\|chr9 (72652144-72652593)