Non-Coding RNA Search

rpldo0121_e7.y1

Sequence:


               
               GTTAGTTCCCGCTAATGATCGTTCTAAAATGATTGCCAAGAAAACTCAAAGCGATATCCA
GCTTTCTCGCCTCCTCCTGCTTGTCCCTGGTTTTGCCAGACAGAAAGGATGGTGAGGAAG
GCATATTGTGCAATTTCTTATTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTAGTTCCCGCTAATGATCGTTCTAAAATGATTGCCAAGAAAACTCAAAGCGATATCCA
GCTTTCTCGCCTCCTCCTGCTTGTCCCTGGTTTTGCCAGACAGAAAGGATGGTGAGGAAG
GCATATTGTGCAATTTCTTATTAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               30-144, - strand, RNAz p=0.965529

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               30-144, - strand, RNAz p=0.965529

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               7-144, gnl|bosTau2|chr10 (49603817-49603677)
               

               
               7-144, gnl|canFam2|chr8 (38703783-38704358)
               

               
               7-144, gnl|dasNov1|scaffold_5044 (14864-14324)
               

               
               7-144, gnl|echTel1|scaffold_311133 (39167-39726)
               

               
               7-144, gnl|hg17|chr14 (60180056-60180625)
               

               
               7-144, gnl|Hg17|chr14 (60180126-60180258)
               

               
               7-144, gnl|loxAfr1|scaffold_47377 (11516-10910)
               

               
               7-144, gnl|mm7|chr12 (70991359-70991921)
               

               
               7-144, gnl|Mm7|chr12 (70991424-70991555)
               

               
               7-144, gnl|monDom2|scaffold_8 (73159884-73160474)
               

               
               7-144, gnl|oryCun1|scaffold_202186 (130161-129621)
               

               
               7-144, gnl|panTro1|chr15 (59754085-59754654)
               

               
               7-144, gnl|rheMac2|chr7 (123662569-123663141)
               

               
               7-144, gnl|rn3|chr6 (95472611-95473176)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-144, gnl|bosTau2|chr10 (49603817-49603677)
               

               
               7-144, gnl|canFam2|chr8 (38703783-38704358)
               

               
               7-144, gnl|dasNov1|scaffold_5044 (14864-14324)
               

               
               7-144, gnl|echTel1|scaffold_311133 (39167-39726)
               

               
               7-144, gnl|hg17|chr14 (60180056-60180625)
               

               
               7-144, gnl|Hg17|chr14 (60180126-60180258)
               

               
               7-144, gnl|loxAfr1|scaffold_47377 (11516-10910)
               

               
               7-144, gnl|mm7|chr12 (70991359-70991921)
               

               
               7-144, gnl|Mm7|chr12 (70991424-70991555)
               

               
               7-144, gnl|monDom2|scaffold_8 (73159884-73160474)
               

               
               7-144, gnl|oryCun1|scaffold_202186 (130161-129621)
               

               
               7-144, gnl|panTro1|chr15 (59754085-59754654)
               

               
               7-144, gnl|rheMac2|chr7 (123662569-123663141)
               

               
               7-144, gnl|rn3|chr6 (95472611-95473176)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ldo (0.0970026)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.0970026)

	7-144, gnl\|bosTau2\|chr10 (49603817-49603677)
	7-144, gnl\|canFam2\|chr8 (38703783-38704358)
	7-144, gnl\|dasNov1\|scaffold_5044 (14864-14324)
	7-144, gnl\|echTel1\|scaffold_311133 (39167-39726)
	7-144, gnl\|hg17\|chr14 (60180056-60180625)
	7-144, gnl\|Hg17\|chr14 (60180126-60180258)
	7-144, gnl\|loxAfr1\|scaffold_47377 (11516-10910)
	7-144, gnl\|mm7\|chr12 (70991359-70991921)
	7-144, gnl\|Mm7\|chr12 (70991424-70991555)
	7-144, gnl\|monDom2\|scaffold_8 (73159884-73160474)
	7-144, gnl\|oryCun1\|scaffold_202186 (130161-129621)
	7-144, gnl\|panTro1\|chr15 (59754085-59754654)
	7-144, gnl\|rheMac2\|chr7 (123662569-123663141)
	7-144, gnl\|rn3\|chr6 (95472611-95473176)