rpldo0121_n9.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAATACTGTGACATCAGGCATGGCTCCTGACACAAAGGAAACCATTTTCAGTATCAGCAA AGCTTATATGCAGAATCCCAACGCCATCATACTGTGTATTCAAGATGGCTCTGTGGATGC TGAGCGCAGCATTGTTACAGACTTGGTCAGTCAAATGGATCCTCATGGAAGAAGGACAAT ATTTGTTTTGACCAAAGTAGACCTGGCAGAGAAAAATGTGGCTAGTCCAAGCAGGATTCA GCAAATAATTGAAGGAAAACTCTTCCCAATGAAAGCTCTAGGTTATTTTGCTGTTGTAAC AGGAAAAGGAAACAGCTCTGAAAGCATTGAAGCTATAAGAGACTATGAAGAAGAATTTTT TCAGAATTCTAAACTTCTAAAGACAAGCATGCTAAAGGCACACCAGGTGACTACAAGAAA TCTAAGCCTTGCTGTATCAGACTGCTTTTGGAAAATGGTACGAGAGTCAGTTGAACAACA GGCTGATAGTTTTAAAGCAACACGTTTCAACCTTGAAACTGAGTGGAAGAATAACTATCC TCGCCTCCGAGAACTTGACCGGAACGAACTATTTGAAAAAGCTAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAATACTGTGACATCAGGCATGGCTCCTGACACAAAGGAAACCATTTTCAGTATCAGCAA AGCTTATATGCAGAATCCCAACGCCATCATACTGTGTATTCAAGATGGCTCTGTGGATGC TGAGCGCAGCATTGTTACAGACTTGGTCAGTCAAATGGATCCTCATGGAAGAAGGACAAT ATTTGTTTTGACCAAAGTAGACCTGGCAGAGAAAAATGTGGCTAGTCCAAGCAGGATTCA GCAAATAATTGAAGGAAAACTCTTCCCAATGAAAGCTCTAGGTTATTTTGCTGTTGTAAC AGGAAAAGGAAACAGCTCTGAAAGCATTGAAGCTATAAGAGACTATGAAGAAGAATTTTT TCAGAATTCTAAACTTCTAAAGACAAGCATGCTAAAGGCACACCAGGTGACTACAAGAAA TCTAAGCCTTGCTGTATCAGACTGCTTTTGGAAAATGGTACGAGAGTCAGTTGAACAACA GGCTGATAGTTTTAAAGCAACACGTTTCAACCTTGAAACTGAGTGGAAGAATAACTATCC TCGCCTCCGAGAACTTGACCGGAACGAACTATTTGAAAAAGCTAAAA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 103-257, - strand, RNAz p=0.933242 | |
| 141-250, - strand, RNAz p=0.862869 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 103-257, - strand, RNAz p=0.933242 | |
| 141-250, - strand, RNAz p=0.862869 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 103-257, gnl|bosTau2|chr1 (45951638-45951483) | |
| 103-257, gnl|canFam2|chr23 (55163909-55164058) | |
| 103-257, gnl|danRer3|chr6 (18936774-18936912) | |
| 103-257, gnl|dasNov1|scaffold_3610 (62450-62600) | |
| 103-257, gnl|echTel1|scaffold_309162 (52588-52438) | |
| 103-257, gnl|fr1|chrUn (275276355-275276214) | |
| 103-257, gnl|galGal2|chr9 (12463506-12463356) | |
| 103-257, gnl|hg17|chr3 (194844464-194844614) | |
| 103-257, gnl|Hg17|chr3 (194844464-194844639) | |
| 103-257, gnl|loxAfr1|scaffold_23793 (19161-19011) | |
| 103-257, gnl|mm7|chr16 (29282135-29282271) | |
| 103-257, gnl|Mm7|chr16 (29282135-29282277) | |
| 103-257, gnl|monDom2|scaffold_92 (4943466-4943605) | |
| 103-257, gnl|oryCun1|scaffold_209775 (28659-28809) | |
| 103-257, gnl|panTro1|chr2 (198954923-198955073) | |
| 103-257, gnl|rheMac2|chr2 (185853648-185853798) | |
| 103-257, gnl|rn3|chr11 (73081824-73081674) | |
| 103-257, gnl|tetNig1|chr1 (12329787-12329636) | |
| 103-257, gnl|xenTro1|scaffold_213 (1453430-1453582) | |
| 382-497, gnl|bosTau2|chr1 (45947222-45947107) | |
| 382-497, gnl|Hg17|chr3 (194847556-194847671) | |
| 382-497, gnl|Mm7|chr16 (29285279-29285394) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 103-257, gnl|bosTau2|chr1 (45951638-45951483) | |
| 103-257, gnl|canFam2|chr23 (55163909-55164058) | |
| 103-257, gnl|danRer3|chr6 (18936774-18936912) | |
| 103-257, gnl|dasNov1|scaffold_3610 (62450-62600) | |
| 103-257, gnl|echTel1|scaffold_309162 (52588-52438) | |
| 103-257, gnl|fr1|chrUn (275276355-275276214) | |
| 103-257, gnl|galGal2|chr9 (12463506-12463356) | |
| 103-257, gnl|hg17|chr3 (194844464-194844614) | |
| 103-257, gnl|Hg17|chr3 (194844464-194844639) | |
| 103-257, gnl|loxAfr1|scaffold_23793 (19161-19011) | |
| 103-257, gnl|mm7|chr16 (29282135-29282271) | |
| 103-257, gnl|Mm7|chr16 (29282135-29282277) | |
| 103-257, gnl|monDom2|scaffold_92 (4943466-4943605) | |
| 103-257, gnl|oryCun1|scaffold_209775 (28659-28809) | |
| 103-257, gnl|panTro1|chr2 (198954923-198955073) | |
| 103-257, gnl|rheMac2|chr2 (185853648-185853798) | |
| 103-257, gnl|rn3|chr11 (73081824-73081674) | |
| 103-257, gnl|tetNig1|chr1 (12329787-12329636) | |
| 103-257, gnl|xenTro1|scaffold_213 (1453430-1453582) | |
| 382-497, gnl|bosTau2|chr1 (45947222-45947107) | |
| 382-497, gnl|Hg17|chr3 (194847556-194847671) | |
| 382-497, gnl|Mm7|chr16 (29285279-29285394) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ldo (0.0970026) |