Non-Coding RNA Search

rpldo0121_p11.y1

Sequence:


               
               AAAAATCCAGAGGGAGATGTATTAGAGTTTTCTAGAGGAAAACAGAACCAATAGGATCTA
TCTATCTAGTGAGAGACAGAGAGAGAGAGATTGATTGATGATAAGAAATTGGCTCACACG
ATTATGGAGGCTGGCAACCCCAATCTGCAGGGTGGGTTGGCAGGTTGGAGTTGGAGACAT
AGGGAGAGCCAGTGTTCTAGTTCAAGGGCTGTCAGGAAGGAAGGGTGACACTGCAGATGA
AGCCTAAAGGCGGTGTGCTGAAGAATTCTCTCAACTCAGGGAGGATACGACCACCTTGTG
CAGTGTACAACCAGTCTACCTGTACCTGGAAGGTCTGACTACCATGGGAGAGGGAGACCA
CCAAAGGCCAGGGAAGCACAACTTGTTCAATGTTCtgccaggacgtggaagcaacctaaa
tgtccatcaacagaggaatggataaagaagatgtggtacatgtacacagtggaatactac
tcggccataaaaaaatgaagaaataatgccatttgcagcaacatggatggacctagagat
tatcataccaagtgaagtaa

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAATCCAGAGGGAGATGTATTAGAGTTTTCTAGAGGAAAACAGAACCAATAGGATCTA
TCTATCTAGTGAGAGACAGAGAGAGAGAGATTGATTGATGATAAGAAATTGGCTCACACG
ATTATGGAGGCTGGCAACCCCAATCTGCAGGGTGGGTTGGCAGGTTGGAGTTGGAGACAT
AGGGAGAGCCAGTGTTCTAGTTCAAGGGCTGTCAGGAAGGAAGGGTGACACTGCAGATGA
AGCCTAAAGGCGGTGTGCTGAAGAATTCTCTCAACTCAGGGAGGATACGACCACCTTGTG
CAGTGTACAACCAGTCTACCTGTACCTGGAAGGTCTGACTACCATGGGAGAGGGAGACCA
CCAAAGGCCAGGGAAGCACAACTTGTTCAATGTTCtgccaggacgtggaagcaacctaaa
tgtccatcaacagaggaatggataaagaagatgtggtacatgtacacagtggaatactac
tcggccataaaaaaatgaagaaataatgccatttgcagcaacatggatggacctagagat
tatcataccaagtgaagtaa

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56492562|emb|CAI01941.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56492562|emb|CAI01941.1|

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               65-272, gnl|bosTau2|chr17 (3463404-3463206)
               

               
               65-272, gnl|Hg17|chr4 (154440952-154441214)
               


               
               294-396, gnl|bosTau2|chr4 (23619860-23619758)
               

               
               294-396, gnl|canFam2|chr18 (17324897-17324424)
               

               
               294-396, gnl|hg17|chr7 (105377180-105377641)
               

               
               294-396, gnl|Hg17|chr7 (105377256-105377358)
               

               
               294-396, gnl|mm7|chr12 (30763462-30763037)
               

               
               294-396, gnl|panTro1|chr6 (107271174-107271635)
               

               
               294-396, gnl|rheMac2|chr3 (143559956-143560421)
               

               
               294-396, gnl|rn3|chr6 (51256126-51255698)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-272, gnl|bosTau2|chr17 (3463404-3463206)
               

               
               65-272, gnl|Hg17|chr4 (154440952-154441214)
               


               
               294-396, gnl|bosTau2|chr4 (23619860-23619758)
               

               
               294-396, gnl|canFam2|chr18 (17324897-17324424)
               

               
               294-396, gnl|hg17|chr7 (105377180-105377641)
               

               
               294-396, gnl|Hg17|chr7 (105377256-105377358)
               

               
               294-396, gnl|mm7|chr12 (30763462-30763037)
               

               
               294-396, gnl|panTro1|chr6 (107271174-107271635)
               

               
               294-396, gnl|rheMac2|chr3 (143559956-143560421)
               

               
               294-396, gnl|rn3|chr6 (51256126-51255698)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ldo (0.0970026)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.0970026)

	65-272, gnl\|bosTau2\|chr17 (3463404-3463206)
	65-272, gnl\|Hg17\|chr4 (154440952-154441214)

	294-396, gnl\|bosTau2\|chr4 (23619860-23619758)
	294-396, gnl\|canFam2\|chr18 (17324897-17324424)
	294-396, gnl\|hg17\|chr7 (105377180-105377641)
	294-396, gnl\|Hg17\|chr7 (105377256-105377358)
	294-396, gnl\|mm7\|chr12 (30763462-30763037)
	294-396, gnl\|panTro1\|chr6 (107271174-107271635)
	294-396, gnl\|rheMac2\|chr3 (143559956-143560421)
	294-396, gnl\|rn3\|chr6 (51256126-51255698)