Non-Coding RNA Search

rpldo0124_j6.y1

Sequence:


               
               CTTGGACTCTTCCGGGGCACCCCATCTCTGTGCTGGGGCCACCCACTTCCTCCCAGTAAA
GACAAGAAGACCTCGGGACAACCGAACTCAACTCTGCAAGAGCTTCTGTCCTTTTTGGAA
CATGGCCTTCTCTATTCTGTGCTTTTCTGAGTTGCTTTTGAAAGCAAATATATCTTCAGA
CCACATAAAATATGGAGCTTAGAAGATGAAGAACATACATGTAGtcacaacagctaagac
atggaagtaacttaagtgtccagtgacggaagaatggatgaagatggtatggtccatata
tacaatggactattactcaaccataagaaagaatgaaataatgccatttgcaacaacaca
gaaggacctagagattctcatactaagtgaGGGACACATACAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGGACTCTTCCGGGGCACCCCATCTCTGTGCTGGGGCCACCCACTTCCTCCCAGTAAA
GACAAGAAGACCTCGGGACAACCGAACTCAACTCTGCAAGAGCTTCTGTCCTTTTTGGAA
CATGGCCTTCTCTATTCTGTGCTTTTCTGAGTTGCTTTTGAAAGCAAATATATCTTCAGA
CCACATAAAATATGGAGCTTAGAAGATGAAGAACATACATGTAGtcacaacagctaagac
atggaagtaacttaagtgtccagtgacggaagaatggatgaagatggtatggtccatata
tacaatggactattactcaaccataagaaagaatgaaataatgccatttgcaacaacaca
gaaggacctagagattctcatactaagtgaGGGACACATACAAAT

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               4-302, gnl|bosTau2|chr27 (12597324-12597018)
               

               
               4-302, gnl|canFam2|chr16 (43655926-43656144)
               

               
               4-302, gnl|dasNov1|scaffold_33944 (3738-3927)
               

               
               4-302, gnl|echTel1|scaffold_280054 (49260-49404)
               

               
               4-302, gnl|hg17|chr8 (17263263-17263480)
               

               
               4-302, gnl|loxAfr1|scaffold_17169 (1269-1051)
               

               
               4-302, gnl|mm7|chr8 (39388069-39388220)
               

               
               4-302, gnl|oryCun1|scaffold_198339 (99294-99539)
               

               
               4-302, gnl|panTro1|chr7 (18022481-18022698)
               

               
               4-302, gnl|rheMac2|chr8 (17232355-17232570)
               

               
               4-302, gnl|rn3|chr16 (55020926-55020752)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-302, gnl|bosTau2|chr27 (12597324-12597018)
               

               
               4-302, gnl|canFam2|chr16 (43655926-43656144)
               

               
               4-302, gnl|dasNov1|scaffold_33944 (3738-3927)
               

               
               4-302, gnl|echTel1|scaffold_280054 (49260-49404)
               

               
               4-302, gnl|hg17|chr8 (17263263-17263480)
               

               
               4-302, gnl|loxAfr1|scaffold_17169 (1269-1051)
               

               
               4-302, gnl|mm7|chr8 (39388069-39388220)
               

               
               4-302, gnl|oryCun1|scaffold_198339 (99294-99539)
               

               
               4-302, gnl|panTro1|chr7 (18022481-18022698)
               

               
               4-302, gnl|rheMac2|chr8 (17232355-17232570)
               

               
               4-302, gnl|rn3|chr16 (55020926-55020752)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ldo (0.0970026)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.0970026)

	4-302, gnl\|bosTau2\|chr27 (12597324-12597018)
	4-302, gnl\|canFam2\|chr16 (43655926-43656144)
	4-302, gnl\|dasNov1\|scaffold_33944 (3738-3927)
	4-302, gnl\|echTel1\|scaffold_280054 (49260-49404)
	4-302, gnl\|hg17\|chr8 (17263263-17263480)
	4-302, gnl\|loxAfr1\|scaffold_17169 (1269-1051)
	4-302, gnl\|mm7\|chr8 (39388069-39388220)
	4-302, gnl\|oryCun1\|scaffold_198339 (99294-99539)
	4-302, gnl\|panTro1\|chr7 (18022481-18022698)
	4-302, gnl\|rheMac2\|chr8 (17232355-17232570)
	4-302, gnl\|rn3\|chr16 (55020926-55020752)