Non-Coding RNA Search

rpliv0104_f7.y1

Sequence:


               
               GGTGCTTTCTGGAGAAAGACACACACATACCCAGAGAAAAAAGGTAACCTTCCTTGAAGA
AGTTACGGAGTATTATATAAGTGGTGATGAGGATCGAAAAGGACCGTGGGAAGAATTTGC
ACGGGATGGATGCAGGTTCCAGAAACGCATTCAAGAAACAGAAGATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGCTTTCTGGAGAAAGACACACACATACCCAGAGAAAAAAGGTAACCTTCCTTGAAGA
AGTTACGGAGTATTATATAAGTGGTGATGAGGATCGAAAAGGACCGTGGGAAGAATTTGC
ACGGGATGGATGCAGGTTCCAGAAACGCATTCAAGAAACAGAAGATGC

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               42-168, gnl|bosTau2|chr16 (1990872-1990998)
               

               
               42-168, gnl|canFam2|chr38 (3959653-3959828)
               

               
               42-168, gnl|dasNov1|scaffold_31435 (34160-34334)
               

               
               42-168, gnl|echTel1|scaffold_325456 (52006-51831)
               

               
               42-168, gnl|fr1|chrUn (307392498-307392660)
               

               
               42-168, gnl|galGal2|chr26 (394810-394985)
               

               
               42-168, gnl|hg17|chr1 (201106945-201107120)
               

               
               42-168, gnl|Hg17|chr1 (201107100-201106974)
               

               
               42-168, gnl|loxAfr1|scaffold_52059 (4364-4194)
               

               
               42-168, gnl|mm7|chr1 (133037738-133037563)
               

               
               42-168, gnl|Mm7|chr1 (133037581-133037707)
               

               
               42-168, gnl|monDom2|scaffold_13 (5636393-5636561)
               

               
               42-168, gnl|panTro1|chr1 (184048415-184048590)
               

               
               42-168, gnl|rheMac2|chr1 (166026334-166026159)
               

               
               42-168, gnl|rn3|chr13 (46058737-46058562)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               42-168, gnl|bosTau2|chr16 (1990872-1990998)
               

               
               42-168, gnl|canFam2|chr38 (3959653-3959828)
               

               
               42-168, gnl|dasNov1|scaffold_31435 (34160-34334)
               

               
               42-168, gnl|echTel1|scaffold_325456 (52006-51831)
               

               
               42-168, gnl|fr1|chrUn (307392498-307392660)
               

               
               42-168, gnl|galGal2|chr26 (394810-394985)
               

               
               42-168, gnl|hg17|chr1 (201106945-201107120)
               

               
               42-168, gnl|Hg17|chr1 (201107100-201106974)
               

               
               42-168, gnl|loxAfr1|scaffold_52059 (4364-4194)
               

               
               42-168, gnl|mm7|chr1 (133037738-133037563)
               

               
               42-168, gnl|Mm7|chr1 (133037581-133037707)
               

               
               42-168, gnl|monDom2|scaffold_13 (5636393-5636561)
               

               
               42-168, gnl|panTro1|chr1 (184048415-184048590)
               

               
               42-168, gnl|rheMac2|chr1 (166026334-166026159)
               

               
               42-168, gnl|rn3|chr13 (46058737-46058562)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               liv (0.146284)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)

	42-168, gnl\|bosTau2\|chr16 (1990872-1990998)
	42-168, gnl\|canFam2\|chr38 (3959653-3959828)
	42-168, gnl\|dasNov1\|scaffold_31435 (34160-34334)
	42-168, gnl\|echTel1\|scaffold_325456 (52006-51831)
	42-168, gnl\|fr1\|chrUn (307392498-307392660)
	42-168, gnl\|galGal2\|chr26 (394810-394985)
	42-168, gnl\|hg17\|chr1 (201106945-201107120)
	42-168, gnl\|Hg17\|chr1 (201107100-201106974)
	42-168, gnl\|loxAfr1\|scaffold_52059 (4364-4194)
	42-168, gnl\|mm7\|chr1 (133037738-133037563)
	42-168, gnl\|Mm7\|chr1 (133037581-133037707)
	42-168, gnl\|monDom2\|scaffold_13 (5636393-5636561)
	42-168, gnl\|panTro1\|chr1 (184048415-184048590)
	42-168, gnl\|rheMac2\|chr1 (166026334-166026159)
	42-168, gnl\|rn3\|chr13 (46058737-46058562)