Non-Coding RNA Search

rpliv0106_i18.y1

Sequence:


               
               GGACTTCAGCCCTTTCGACTTTGCCCACTTTGGATTTCCTTCAGATAACTCAGGTAAAGA
ACGCAGCTTCCTGACAAAGCCTTCCCCAAAACTGGGGCGGCATGCCTACTCGAGGCCCAA
GGTTGACATTCAGAAAATCTGCATAGGAAATAAAAACATCTTCACTGTGTCGGACCTGAA
ACCTGACACGCAGTACTACTTTGACGTCTTTGTGGCCAACAGCAACAGCAACACGAGCAC
TGCCTACGTGGGCACCTTTGCCCGGACCAAGGAAGAAGCAAAACAGAAGACAGTTGAGCT
GAAAGATGGGAAGGTTACAGATGTGTTTGTTAAAAGGAAGGGAGCAAAGTTTCTACGATT
TGCTCCAGTCTCCTCTCACCAAAAAGTCACCTTCTTTATTCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACTTCAGCCCTTTCGACTTTGCCCACTTTGGATTTCCTTCAGATAACTCAGGTAAAGA
ACGCAGCTTCCTGACAAAGCCTTCCCCAAAACTGGGGCGGCATGCCTACTCGAGGCCCAA
GGTTGACATTCAGAAAATCTGCATAGGAAATAAAAACATCTTCACTGTGTCGGACCTGAA
ACCTGACACGCAGTACTACTTTGACGTCTTTGTGGCCAACAGCAACAGCAACACGAGCAC
TGCCTACGTGGGCACCTTTGCCCGGACCAAGGAAGAAGCAAAACAGAAGACAGTTGAGCT
GAAAGATGGGAAGGTTACAGATGTGTTTGTTAAAAGGAAGGGAGCAAAGTTTCTACGATT
TGCTCCAGTCTCCTCTCACCAAAAAGTCACCTTCTTTATTCACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10439799|dbj|BAB15573.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10439799|dbj|BAB15573.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               280-399, + strand, RNAz p=0.743529

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               280-399, + strand, RNAz p=0.743529

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-404, gnl|bosTau2|chr6 (1141588-1141991)
               

               
               1-404, gnl|Hg17|chr4 (122315996-122315593)
               

               
               1-404, gnl|Mm7|chr6 (65691226-65691629)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-404, gnl|bosTau2|chr6 (1141588-1141991)
               

               
               1-404, gnl|Hg17|chr4 (122315996-122315593)
               

               
               1-404, gnl|Mm7|chr6 (65691226-65691629)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               liv (0.146284)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)

	1-404, gnl\|bosTau2\|chr6 (1141588-1141991)
	1-404, gnl\|Hg17\|chr4 (122315996-122315593)
	1-404, gnl\|Mm7\|chr6 (65691226-65691629)