Non-Coding RNA Search

rpliv0109_f22.y1

Sequence:


               
               TGAGATGGGGAGGTCTGTGGCAAAGGAGGATTGCAGAGCAAGCTCCTCGATTTTCTTTTG
GTGGAAGAGAAGCGTTGTTGCTTCCACAGAGAAGAGCTTCATTGAAAGAAGCTCCAATTC
AACTACTGTGGATTCTATGACTATATTCTGGAGTGGGGAGATCCTGAGGGAGCCTGTCTC
CAGAAGCTGGCTTAATTGGGTTCCAACTGGGCAGAATGAATTTTTAATCAGAACAGATTT
TATTTGCTTTAAATGAATATTGTTGCAGTTAGCTATTAATGACCCCTTTGTTGATCAATA
GAGGCTATCAGTGGCTGACCTTGACAGATTCCATTACTGAAATAATGAGTCTGATGGGTT
ATGATGATTAACATTTGCGAATGGTTTTACATTTGCAGGGCAGGAGAGGGGTGTGAAATA
AAGCTGCTTATTCAGGCGGGTTGACCATGGGGAGATGGAAGGAAGTAGTGAAAAGTGCAG
GGAGCTTGATTAAAAAATGAATGGCTCCCAGGAAGAAGTCGTACAAATGAAGGCATATTC
AGATACATATCTTGGAATCACCATGTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGATGGGGAGGTCTGTGGCAAAGGAGGATTGCAGAGCAAGCTCCTCGATTTTCTTTTG
GTGGAAGAGAAGCGTTGTTGCTTCCACAGAGAAGAGCTTCATTGAAAGAAGCTCCAATTC
AACTACTGTGGATTCTATGACTATATTCTGGAGTGGGGAGATCCTGAGGGAGCCTGTCTC
CAGAAGCTGGCTTAATTGGGTTCCAACTGGGCAGAATGAATTTTTAATCAGAACAGATTT
TATTTGCTTTAAATGAATATTGTTGCAGTTAGCTATTAATGACCCCTTTGTTGATCAATA
GAGGCTATCAGTGGCTGACCTTGACAGATTCCATTACTGAAATAATGAGTCTGATGGGTT
ATGATGATTAACATTTGCGAATGGTTTTACATTTGCAGGGCAGGAGAGGGGTGTGAAATA
AAGCTGCTTATTCAGGCGGGTTGACCATGGGGAGATGGAAGGAAGTAGTGAAAAGTGCAG
GGAGCTTGATTAAAAAATGAATGGCTCCCAGGAAGAAGTCGTACAAATGAAGGCATATTC
AGATACATATCTTGGAATCACCATGTTGA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               253-371, - strand, RNAz p=0.736485
               

               
               276-391, - strand, RNAz p=0.667343
               

               
               455-569, - strand, RNAz p=0.824054

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               253-371, - strand, RNAz p=0.736485
               

               
               276-391, - strand, RNAz p=0.667343
               

               
               455-569, - strand, RNAz p=0.824054

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               137-569, gnl|bosTau2|chr12 (7476072-7476505)
               

               
               137-569, gnl|canFam2|chr22 (7423663-7423326)
               

               
               137-569, gnl|dasNov1|scaffold_29227 (261-592)
               

               
               137-569, gnl|echTel1|scaffold_109777 (615-935)
               

               
               137-569, gnl|hg17|chr13 (46332719-46333058)
               

               
               137-569, gnl|Hg17|chr13 (46332718-46333142)
               

               
               137-569, gnl|loxAfr1|scaffold_5825 (38964-39312)
               

               
               137-569, gnl|mm7|chr14 (69360641-69360317)
               

               
               137-569, gnl|Mm7|chr14 (69360645-69360232)
               

               
               137-569, gnl|monDom2|scaffold_15 (60811569-60811239)
               

               
               137-569, gnl|oryCun1|scaffold_193311 (816-508)
               

               
               137-569, gnl|panTro1|chr14_random (12366910-12367249)
               

               
               137-569, gnl|rheMac2|chr17 (25681337-25681671)
               

               
               137-569, gnl|rn3|chr15 (55523175-55522839)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               137-569, gnl|bosTau2|chr12 (7476072-7476505)
               

               
               137-569, gnl|canFam2|chr22 (7423663-7423326)
               

               
               137-569, gnl|dasNov1|scaffold_29227 (261-592)
               

               
               137-569, gnl|echTel1|scaffold_109777 (615-935)
               

               
               137-569, gnl|hg17|chr13 (46332719-46333058)
               

               
               137-569, gnl|Hg17|chr13 (46332718-46333142)
               

               
               137-569, gnl|loxAfr1|scaffold_5825 (38964-39312)
               

               
               137-569, gnl|mm7|chr14 (69360641-69360317)
               

               
               137-569, gnl|Mm7|chr14 (69360645-69360232)
               

               
               137-569, gnl|monDom2|scaffold_15 (60811569-60811239)
               

               
               137-569, gnl|oryCun1|scaffold_193311 (816-508)
               

               
               137-569, gnl|panTro1|chr14_random (12366910-12367249)
               

               
               137-569, gnl|rheMac2|chr17 (25681337-25681671)
               

               
               137-569, gnl|rn3|chr15 (55523175-55522839)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               liv (0.146284)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)

	253-371, - strand, RNAz p=0.736485
	276-391, - strand, RNAz p=0.667343
	455-569, - strand, RNAz p=0.824054

	137-569, gnl\|bosTau2\|chr12 (7476072-7476505)
	137-569, gnl\|canFam2\|chr22 (7423663-7423326)
	137-569, gnl\|dasNov1\|scaffold_29227 (261-592)
	137-569, gnl\|echTel1\|scaffold_109777 (615-935)
	137-569, gnl\|hg17\|chr13 (46332719-46333058)
	137-569, gnl\|Hg17\|chr13 (46332718-46333142)
	137-569, gnl\|loxAfr1\|scaffold_5825 (38964-39312)
	137-569, gnl\|mm7\|chr14 (69360641-69360317)
	137-569, gnl\|Mm7\|chr14 (69360645-69360232)
	137-569, gnl\|monDom2\|scaffold_15 (60811569-60811239)
	137-569, gnl\|oryCun1\|scaffold_193311 (816-508)
	137-569, gnl\|panTro1\|chr14_random (12366910-12367249)
	137-569, gnl\|rheMac2\|chr17 (25681337-25681671)
	137-569, gnl\|rn3\|chr15 (55523175-55522839)