Non-Coding RNA Search

rpliv0112_l16.y1

Sequence:


               
               GAGTAGGCCAGTAAATCAAACCAGCCAGTTTGACTAGTTCCTCAGTCATAGTGATTGGTG
TAGGAATGGGGAGCTTAACAAAAGGAAGCCAATTGGAGACAACCTTACCACTTGGGCTAG
CATTATTGAGAAAGGAGCACCTCACTCTGGCTGAAATTAAGCAAAAACTTAAATTACCTA
TGGCCATGTGCTATGAACCTGCCTGAGAATGAAATCATTACAAGAACATAGAGGCAGTCT
CAATGGTATTGCAAGAAGAAAAAAGAGCCCATGAATTGAGACACATATTTCTTGACTCTT
TCCTCAGAGTTGAAACCCTAAGGTGTAAGGGATAGATACTGCCAGGAAGATTTTGAAATT
CAAAAATGGAACTTGTGGCTTGTGCCCTGCTTCCCACCTGGGAACACTGGCAACTACAAT
CAAGTAGAAATGGCAGCATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTAGGCCAGTAAATCAAACCAGCCAGTTTGACTAGTTCCTCAGTCATAGTGATTGGTG
TAGGAATGGGGAGCTTAACAAAAGGAAGCCAATTGGAGACAACCTTACCACTTGGGCTAG
CATTATTGAGAAAGGAGCACCTCACTCTGGCTGAAATTAAGCAAAAACTTAAATTACCTA
TGGCCATGTGCTATGAACCTGCCTGAGAATGAAATCATTACAAGAACATAGAGGCAGTCT
CAATGGTATTGCAAGAAGAAAAAAGAGCCCATGAATTGAGACACATATTTCTTGACTCTT
TCCTCAGAGTTGAAACCCTAAGGTGTAAGGGATAGATACTGCCAGGAAGATTTTGAAATT
CAAAAATGGAACTTGTGGCTTGTGCCCTGCTTCCCACCTGGGAACACTGGCAACTACAAT
CAAGTAGAAATGGCAGCATA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               332-440, - strand, RNAz p=0.984284

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               332-440, - strand, RNAz p=0.984284

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               34-440, gnl|bosTau2|chr18 (27229796-27230211)
               

               
               34-440, gnl|canFam2|chr13 (64989187-64989523)
               

               
               34-440, gnl|dasNov1|scaffold_39783 (10845-10506)
               

               
               34-440, gnl|hg17|chr4 (74494253-74494649)
               

               
               34-440, gnl|Hg17|chr4 (74494355-74495213)
               

               
               34-440, gnl|oryCun1|scaffold_190380 (5157-4783)
               

               
               34-440, gnl|panTro1|chr3 (59223236-59222839)
               

               
               34-440, gnl|rheMac2|chr5 (56422048-56421656)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-440, gnl|bosTau2|chr18 (27229796-27230211)
               

               
               34-440, gnl|canFam2|chr13 (64989187-64989523)
               

               
               34-440, gnl|dasNov1|scaffold_39783 (10845-10506)
               

               
               34-440, gnl|hg17|chr4 (74494253-74494649)
               

               
               34-440, gnl|Hg17|chr4 (74494355-74495213)
               

               
               34-440, gnl|oryCun1|scaffold_190380 (5157-4783)
               

               
               34-440, gnl|panTro1|chr3 (59223236-59222839)
               

               
               34-440, gnl|rheMac2|chr5 (56422048-56421656)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               liv (0.146284)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)

	34-440, gnl\|bosTau2\|chr18 (27229796-27230211)
	34-440, gnl\|canFam2\|chr13 (64989187-64989523)
	34-440, gnl\|dasNov1\|scaffold_39783 (10845-10506)
	34-440, gnl\|hg17\|chr4 (74494253-74494649)
	34-440, gnl\|Hg17\|chr4 (74494355-74495213)
	34-440, gnl\|oryCun1\|scaffold_190380 (5157-4783)
	34-440, gnl\|panTro1\|chr3 (59223236-59222839)
	34-440, gnl\|rheMac2\|chr5 (56422048-56421656)