rpliv0113_g11.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCTGCCTTTCTCAAGAGTTACACAGAGAGAAACAGAAAATAACCAAATAACACCAGAAAA TGGAGCCTCAGCAGGAAGGCAGGAAGTTGTGGATAACACATTTTGGAATGGCTGTGGAGA TTACTACCAACTATATGACAAAGATGAAGATAGTTCAGAATGCAGTGATGGAGAATGGTC TGCTTCTTTGCCTCATCGATTTTCTGGTACAGAAAAAGATCAGTCCTCTAGTGATGAAAG CTGGGAGACTCTGCCAGGAAAAGATGAAAATGAACCTGAACTACAAAGTGATAGCAGTGG TCCTGAAGAAGAAAACCAAGAACTATCTCTTCAGGAAGGAGAACAGACATCCTTGGAAGA GGGAGAAATTCCTTGGTTACAGTACAATGAGGTCAATGAAAGCAGCAGTGATGAAGGAAA TGAGCCTGCCAATGAATTTGCACAGCCAGAAGCTTTCATGTTGGATGGTAACAATAACCT TGAGGATGACTCCAGTGTGAGTGAAGACTTAGATGTGGACTGGAGCCTGTTTGACGGCTT TGCAGATGGACTAGGAGTTGCTGAAGCTATTTCTTATGTGGATCCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCTGCCTTTCTCAAGAGTTACACAGAGAGAAACAGAAAATAACCAAATAACACCAGAAAA TGGAGCCTCAGCAGGAAGGCAGGAAGTTGTGGATAACACATTTTGGAATGGCTGTGGAGA TTACTACCAACTATATGACAAAGATGAAGATAGTTCAGAATGCAGTGATGGAGAATGGTC TGCTTCTTTGCCTCATCGATTTTCTGGTACAGAAAAAGATCAGTCCTCTAGTGATGAAAG CTGGGAGACTCTGCCAGGAAAAGATGAAAATGAACCTGAACTACAAAGTGATAGCAGTGG TCCTGAAGAAGAAAACCAAGAACTATCTCTTCAGGAAGGAGAACAGACATCCTTGGAAGA GGGAGAAATTCCTTGGTTACAGTACAATGAGGTCAATGAAAGCAGCAGTGATGAAGGAAA TGAGCCTGCCAATGAATTTGCACAGCCAGAAGCTTTCATGTTGGATGGTAACAATAACCT TGAGGATGACTCCAGTGTGAGTGAAGACTTAGATGTGGACTGGAGCCTGTTTGACGGCTT TGCAGATGGACTAGGAGTTGCTGAAGCTATTTCTTATGTGGATCCTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 152-339, + strand, RNAz p=0.937072 | |
| 183-299, + strand, RNAz p=0.817831 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 152-339, + strand, RNAz p=0.937072 | |
| 183-299, + strand, RNAz p=0.817831 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 152-339, gnl|bosTau2|chr7 (68384394-68384207) | |
| 152-339, gnl|canFam2|chr3 (5649902-5649663) | |
| 152-339, gnl|danRer3|chr5 (63857313-63857044) | |
| 152-339, gnl|dasNov1|scaffold_76901 (6217-5981) | |
| 152-339, gnl|echTel1|scaffold_324156 (1856-2093) | |
| 152-339, gnl|galGal2|chr10_random (2979558-2979325) | |
| 152-339, gnl|hg17|chr5 (108732134-108732368) | |
| 152-339, gnl|Hg17|chr5 (108732348-108732161) | |
| 152-339, gnl|loxAfr1|scaffold_28834 (16872-16636) | |
| 152-339, gnl|mm7|chr17 (62508369-62508603) | |
| 152-339, gnl|Mm7|chr17 (62508583-62508396) | |
| 152-339, gnl|monDom2|scaffold_60 (3310715-3310485) | |
| 152-339, gnl|oryCun1|scaffold_213733 (41155-41389) | |
| 152-339, gnl|panTro1|chr4 (114807272-114807506) | |
| 152-339, gnl|rheMac2|chr6 (105688329-105688565) | |
| 152-339, gnl|rn3|chr9 (103226506-103226740) | |
| 152-339, gnl|xenTro1|scaffold_113 (1210474-1210208) | |
| 341-525, gnl|bosTau2|chr7 (68374600-68374416) | |
| 341-525, gnl|canFam2|chr3 (5662228-5662006) | |
| 341-525, gnl|danRer3|chr5 (63861574-63861365) | |
| 341-525, gnl|dasNov1|scaffold_14786 (53189-53410) | |
| 341-525, gnl|echTel1|scaffold_317143 (156482-156664) | |
| 341-525, gnl|galGal2|chr10_random (2981136-2980921) | |
| 341-525, gnl|hg17|chr5 (108726434-108726653) | |
| 341-525, gnl|Hg17|chr5 (108726621-108726440) | |
| 341-525, gnl|loxAfr1|scaffold_28834 (22940-22719) | |
| 341-525, gnl|mm7|chr17 (62503507-62503733) | |
| 341-525, gnl|Mm7|chr17 (62503697-62503513) | |
| 341-525, gnl|monDom2|scaffold_60 (3336195-3335973) | |
| 341-525, gnl|oryCun1|scaffold_181518 (4223-4003) | |
| 341-525, gnl|panTro1|chr4 (114801843-114802062) | |
| 341-525, gnl|rheMac2|chr6 (105683614-105683833) | |
| 341-525, gnl|rn3|chr9 (103222379-103222604) | |
| 341-525, gnl|xenTro1|scaffold_113 (1212708-1212500) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 152-339, gnl|bosTau2|chr7 (68384394-68384207) | |
| 152-339, gnl|canFam2|chr3 (5649902-5649663) | |
| 152-339, gnl|danRer3|chr5 (63857313-63857044) | |
| 152-339, gnl|dasNov1|scaffold_76901 (6217-5981) | |
| 152-339, gnl|echTel1|scaffold_324156 (1856-2093) | |
| 152-339, gnl|galGal2|chr10_random (2979558-2979325) | |
| 152-339, gnl|hg17|chr5 (108732134-108732368) | |
| 152-339, gnl|Hg17|chr5 (108732348-108732161) | |
| 152-339, gnl|loxAfr1|scaffold_28834 (16872-16636) | |
| 152-339, gnl|mm7|chr17 (62508369-62508603) | |
| 152-339, gnl|Mm7|chr17 (62508583-62508396) | |
| 152-339, gnl|monDom2|scaffold_60 (3310715-3310485) | |
| 152-339, gnl|oryCun1|scaffold_213733 (41155-41389) | |
| 152-339, gnl|panTro1|chr4 (114807272-114807506) | |
| 152-339, gnl|rheMac2|chr6 (105688329-105688565) | |
| 152-339, gnl|rn3|chr9 (103226506-103226740) | |
| 152-339, gnl|xenTro1|scaffold_113 (1210474-1210208) | |
| 341-525, gnl|bosTau2|chr7 (68374600-68374416) | |
| 341-525, gnl|canFam2|chr3 (5662228-5662006) | |
| 341-525, gnl|danRer3|chr5 (63861574-63861365) | |
| 341-525, gnl|dasNov1|scaffold_14786 (53189-53410) | |
| 341-525, gnl|echTel1|scaffold_317143 (156482-156664) | |
| 341-525, gnl|galGal2|chr10_random (2981136-2980921) | |
| 341-525, gnl|hg17|chr5 (108726434-108726653) | |
| 341-525, gnl|Hg17|chr5 (108726621-108726440) | |
| 341-525, gnl|loxAfr1|scaffold_28834 (22940-22719) | |
| 341-525, gnl|mm7|chr17 (62503507-62503733) | |
| 341-525, gnl|Mm7|chr17 (62503697-62503513) | |
| 341-525, gnl|monDom2|scaffold_60 (3336195-3335973) | |
| 341-525, gnl|oryCun1|scaffold_181518 (4223-4003) | |
| 341-525, gnl|panTro1|chr4 (114801843-114802062) | |
| 341-525, gnl|rheMac2|chr6 (105683614-105683833) | |
| 341-525, gnl|rn3|chr9 (103222379-103222604) | |
| 341-525, gnl|xenTro1|scaffold_113 (1212708-1212500) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| liv (0.146284) |