Non-Coding RNA Search

rpliv0115_a7.y1

Sequence:


               
               TGGGTGGTTCTCAAAGTTCAATTCCTATTGCAAGTTCCTACAAGAAAACTGGATTCCAGA
TGTCAAATAAGAATGCAGTTTTACTCCCATACCGACGTGGTGGCGTTTCTTTGATTTCTT
AAGCTAATACCCCTGCCAGGTCCTGCCACAGCCTAGGAAAGAAAGGACCAGAAAGGCGAG
GAGGAAGATCATAGTTTGTTCTCTTTTCTGCCTGATCCCCAATTAAACAGAGATGTGTAT
GGAGGGTGTGTGTATGTGTATGTGTGTGTGTTTGTGTGTATAAGTCAAATGGTGTGTCCT
GGTAAAACTCCTTCTAATTACTGACTTTAATATTTGTAATTTCAACGTGTAATTTGTAAT
CTCATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGTGGTTCTCAAAGTTCAATTCCTATTGCAAGTTCCTACAAGAAAACTGGATTCCAGA
TGTCAAATAAGAATGCAGTTTTACTCCCATACCGACGTGGTGGCGTTTCTTTGATTTCTT
AAGCTAATACCCCTGCCAGGTCCTGCCACAGCCTAGGAAAGAAAGGACCAGAAAGGCGAG
GAGGAAGATCATAGTTTGTTCTCTTTTCTGCCTGATCCCCAATTAAACAGAGATGTGTAT
GGAGGGTGTGTGTATGTGTATGTGTGTGTGTTTGTGTGTATAAGTCAAATGGTGTGTCCT
GGTAAAACTCCTTCTAATTACTGACTTTAATATTTGTAATTTCAACGTGTAATTTGTAAT
CTCATTG

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-265, gnl|bosTau2|chr20 (11079660-11079925)
               

               
               1-265, gnl|canFam2|chr2 (49423585-49423840)
               

               
               1-265, gnl|dasNov1|scaffold_2688 (120950-120726)
               

               
               1-265, gnl|hg17|chr5 (59099359-59099600)
               

               
               1-265, gnl|Hg17|chr5 (59099621-59099364)
               

               
               1-265, gnl|loxAfr1|scaffold_3355 (29256-29496)
               

               
               1-265, gnl|mm7|chr13 (106399634-106399412)
               

               
               1-265, gnl|Mm7|chr13 (106399389-106399630)
               

               
               1-265, gnl|monDom2|scaffold_27 (23365387-23365634)
               

               
               1-265, gnl|oryCun1|scaffold_120282 (3358-3622)
               

               
               1-265, gnl|panTro1|chr4 (57042292-57042054)
               

               
               1-265, gnl|rheMac2|chr6 (57438937-57439175)
               

               
               1-265, gnl|rn3|chr2 (40565857-40565622)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-265, gnl|bosTau2|chr20 (11079660-11079925)
               

               
               1-265, gnl|canFam2|chr2 (49423585-49423840)
               

               
               1-265, gnl|dasNov1|scaffold_2688 (120950-120726)
               

               
               1-265, gnl|hg17|chr5 (59099359-59099600)
               

               
               1-265, gnl|Hg17|chr5 (59099621-59099364)
               

               
               1-265, gnl|loxAfr1|scaffold_3355 (29256-29496)
               

               
               1-265, gnl|mm7|chr13 (106399634-106399412)
               

               
               1-265, gnl|Mm7|chr13 (106399389-106399630)
               

               
               1-265, gnl|monDom2|scaffold_27 (23365387-23365634)
               

               
               1-265, gnl|oryCun1|scaffold_120282 (3358-3622)
               

               
               1-265, gnl|panTro1|chr4 (57042292-57042054)
               

               
               1-265, gnl|rheMac2|chr6 (57438937-57439175)
               

               
               1-265, gnl|rn3|chr2 (40565857-40565622)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               liv (0.146284)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)

	1-265, gnl\|bosTau2\|chr20 (11079660-11079925)
	1-265, gnl\|canFam2\|chr2 (49423585-49423840)
	1-265, gnl\|dasNov1\|scaffold_2688 (120950-120726)
	1-265, gnl\|hg17\|chr5 (59099359-59099600)
	1-265, gnl\|Hg17\|chr5 (59099621-59099364)
	1-265, gnl\|loxAfr1\|scaffold_3355 (29256-29496)
	1-265, gnl\|mm7\|chr13 (106399634-106399412)
	1-265, gnl\|Mm7\|chr13 (106399389-106399630)
	1-265, gnl\|monDom2\|scaffold_27 (23365387-23365634)
	1-265, gnl\|oryCun1\|scaffold_120282 (3358-3622)
	1-265, gnl\|panTro1\|chr4 (57042292-57042054)
	1-265, gnl\|rheMac2\|chr6 (57438937-57439175)
	1-265, gnl\|rn3\|chr2 (40565857-40565622)