Non-Coding RNA Search

rpliv0126_e2.y1

Sequence:


               
               TATACATCTGTCAGGACAATATGTTATCTTCCCTTAAAAATGCAAATGTGCTCCCTGCCA
TCCAGAGCTCTTTCGTCAACAAATAAATTGAGGTAAAGACTTTACCTAAGTACCCAGTTT
AATTTAAATTGCATTTTATAAACATAAAGACGCCTTTTAAGAGAAGCTTTAATTCCTACT
AGCACCTTGATTTGTGGTTGCCATGGAGAATCAAATCTGTCATTTGACAAGAAAAGTCAC
CCATTTATGACAGCACTTTATCTTGTCTCTCCAGGGGAAGAAAATGTCAAAAGTGAGAGC
AGAAAAAAATAAAGCCTTGAAACACCAGAATTTCTTGATTTCATTTTTATTATTCAGCTA
TCATATCCTTTCTGATAATAGCAACTTGGTGAAAATAAATAATGTTCCTACAGTAAAATC
AAATATTTCCTATTGGAATGGACAAGGTTCTTTGTGACTGTCAGTGCTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATACATCTGTCAGGACAATATGTTATCTTCCCTTAAAAATGCAAATGTGCTCCCTGCCA
TCCAGAGCTCTTTCGTCAACAAATAAATTGAGGTAAAGACTTTACCTAAGTACCCAGTTT
AATTTAAATTGCATTTTATAAACATAAAGACGCCTTTTAAGAGAAGCTTTAATTCCTACT
AGCACCTTGATTTGTGGTTGCCATGGAGAATCAAATCTGTCATTTGACAAGAAAAGTCAC
CCATTTATGACAGCACTTTATCTTGTCTCTCCAGGGGAAGAAAATGTCAAAAGTGAGAGC
AGAAAAAAATAAAGCCTTGAAACACCAGAATTTCTTGATTTCATTTTTATTATTCAGCTA
TCATATCCTTTCTGATAATAGCAACTTGGTGAAAATAAATAATGTTCCTACAGTAAAATC
AAATATTTCCTATTGGAATGGACAAGGTTCTTTGTGACTGTCAGTGCTGTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               160-279, - strand, RNAz p=0.61854

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-279, - strand, RNAz p=0.61854

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-471, gnl|bosTau2|chr22 (24248346-24248813)
               

               
               1-471, gnl|canFam2|chr20 (23559235-23558481)
               

               
               1-471, gnl|dasNov1|scaffold_111 (130201-129451)
               

               
               1-471, gnl|echTel1|scaffold_317135 (55852-55101)
               

               
               1-471, gnl|galGal2|chr12 (16115036-16115789)
               

               
               1-471, gnl|hg17|chr3 (71590514-71591267)
               

               
               1-471, gnl|Hg17|chr3 (71591181-71590713)
               

               
               1-471, gnl|loxAfr1|scaffold_447 (42775-43526)
               

               
               1-471, gnl|mm7|chr6 (99492392-99493153)
               

               
               1-471, gnl|Mm7|chr6 (99493063-99492591)
               

               
               1-471, gnl|monDom2|scaffold_5 (19163674-19164427)
               

               
               1-471, gnl|oryCun1|scaffold_68672 (4097-3344)
               

               
               1-471, gnl|panTro1|chr2 (73532453-73533206)
               

               
               1-471, gnl|rheMac2|chr2 (64756972-64756219)
               

               
               1-471, gnl|rn3|chr4 (134495897-134496655)
               

               
               1-471, gnl|xenTro1|scaffold_441 (490027-490795)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-471, gnl|bosTau2|chr22 (24248346-24248813)
               

               
               1-471, gnl|canFam2|chr20 (23559235-23558481)
               

               
               1-471, gnl|dasNov1|scaffold_111 (130201-129451)
               

               
               1-471, gnl|echTel1|scaffold_317135 (55852-55101)
               

               
               1-471, gnl|galGal2|chr12 (16115036-16115789)
               

               
               1-471, gnl|hg17|chr3 (71590514-71591267)
               

               
               1-471, gnl|Hg17|chr3 (71591181-71590713)
               

               
               1-471, gnl|loxAfr1|scaffold_447 (42775-43526)
               

               
               1-471, gnl|mm7|chr6 (99492392-99493153)
               

               
               1-471, gnl|Mm7|chr6 (99493063-99492591)
               

               
               1-471, gnl|monDom2|scaffold_5 (19163674-19164427)
               

               
               1-471, gnl|oryCun1|scaffold_68672 (4097-3344)
               

               
               1-471, gnl|panTro1|chr2 (73532453-73533206)
               

               
               1-471, gnl|rheMac2|chr2 (64756972-64756219)
               

               
               1-471, gnl|rn3|chr4 (134495897-134496655)
               

               
               1-471, gnl|xenTro1|scaffold_441 (490027-490795)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

Help | Less info


               
               liv (0.146284)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)

	1-471, gnl\|bosTau2\|chr22 (24248346-24248813)
	1-471, gnl\|canFam2\|chr20 (23559235-23558481)
	1-471, gnl\|dasNov1\|scaffold_111 (130201-129451)
	1-471, gnl\|echTel1\|scaffold_317135 (55852-55101)
	1-471, gnl\|galGal2\|chr12 (16115036-16115789)
	1-471, gnl\|hg17\|chr3 (71590514-71591267)
	1-471, gnl\|Hg17\|chr3 (71591181-71590713)
	1-471, gnl\|loxAfr1\|scaffold_447 (42775-43526)
	1-471, gnl\|mm7\|chr6 (99492392-99493153)
	1-471, gnl\|Mm7\|chr6 (99493063-99492591)
	1-471, gnl\|monDom2\|scaffold_5 (19163674-19164427)
	1-471, gnl\|oryCun1\|scaffold_68672 (4097-3344)
	1-471, gnl\|panTro1\|chr2 (73532453-73533206)
	1-471, gnl\|rheMac2\|chr2 (64756972-64756219)
	1-471, gnl\|rn3\|chr4 (134495897-134496655)
	1-471, gnl\|xenTro1\|scaffold_441 (490027-490795)