Non-Coding RNA Search

rpliv0129_n3.y1

Sequence:


               
               TCCTGAATCAGAATCTGCATTTTAGCAGGTGCCCCCGGTGGTTTGTATGCATGCTAATGT
TTGATCTACTCCACTCTGACAAACACAACAGTATTCGCTGATGTGTTTTGTTCCCATCAG
ACAGTAATCATCAGGATCAGCTTATTTACTCTGTGCAAGGCCCTGTTATTCCCAAAACAT
TAGCCTTTTGTTAATGATGTTTGGGCACTGATAATTTATGTAATTTAGTGATGACAGTTA
TAGTAATTGGTTTTTGTTATCAGGAAGATTCAGGTCAATCAGTCACTTTCAGAATATAAA
GCAGAAAACAATAATATCAGTTCTAATACTGTTTTCAAATACATTCATGCGCCTTCCTGG
TTAGTTAGATAAAAGGTAATTAGAGGGCTCAGCTTTGAAGCCAAGTTGATTTCCATGAGA
GTCAGTCAGCAGTAATTAATCTGTTCTGTAGTTAAAGACTCTACCCCAAACCCTCTCTTC
TGTGGACATTTCAGGCCACACAGAAACCAAGTGAGAAATTTGGATGTATCAGGAAATCGC
AAAACTGGTGTCGGAGTGAAACGTCAGAGTTGCATGCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTGAATCAGAATCTGCATTTTAGCAGGTGCCCCCGGTGGTTTGTATGCATGCTAATGT
TTGATCTACTCCACTCTGACAAACACAACAGTATTCGCTGATGTGTTTTGTTCCCATCAG
ACAGTAATCATCAGGATCAGCTTATTTACTCTGTGCAAGGCCCTGTTATTCCCAAAACAT
TAGCCTTTTGTTAATGATGTTTGGGCACTGATAATTTATGTAATTTAGTGATGACAGTTA
TAGTAATTGGTTTTTGTTATCAGGAAGATTCAGGTCAATCAGTCACTTTCAGAATATAAA
GCAGAAAACAATAATATCAGTTCTAATACTGTTTTCAAATACATTCATGCGCCTTCCTGG
TTAGTTAGATAAAAGGTAATTAGAGGGCTCAGCTTTGAAGCCAAGTTGATTTCCATGAGA
GTCAGTCAGCAGTAATTAATCTGTTCTGTAGTTAAAGACTCTACCCCAAACCCTCTCTTC
TGTGGACATTTCAGGCCACACAGAAACCAAGTGAGAAATTTGGATGTATCAGGAAATCGC
AAAACTGGTGTCGGAGTGAAACGTCAGAGTTGCATGCCTT

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               137-579, gnl|bosTau2|chr25 (5357542-5357103)
               

               
               137-579, gnl|canFam2|chr5 (24398741-24398439)
               

               
               137-579, gnl|dasNov1|scaffold_200308 (302-4)
               

               
               137-579, gnl|echTel1|scaffold_323952 (100477-100791)
               

               
               137-579, gnl|hg17|chr11 (111071760-111072041)
               

               
               137-579, gnl|Hg17|chr11 (111071759-111072121)
               

               
               137-579, gnl|loxAfr1|scaffold_6637 (44959-44653)
               

               
               137-579, gnl|mm7|chr9 (50901366-50901097)
               

               
               137-579, gnl|Mm7|chr9 (50901354-50900985)
               

               
               137-579, gnl|oryCun1|scaffold_211749 (12737-13010)
               

               
               137-579, gnl|panTro1|chr9 (113061674-113061958)
               

               
               137-579, gnl|rheMac2|chr14 (110159223-110159514)
               

               
               137-579, gnl|rn3|chr8 (54285202-54284951)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               137-579, gnl|bosTau2|chr25 (5357542-5357103)
               

               
               137-579, gnl|canFam2|chr5 (24398741-24398439)
               

               
               137-579, gnl|dasNov1|scaffold_200308 (302-4)
               

               
               137-579, gnl|echTel1|scaffold_323952 (100477-100791)
               

               
               137-579, gnl|hg17|chr11 (111071760-111072041)
               

               
               137-579, gnl|Hg17|chr11 (111071759-111072121)
               

               
               137-579, gnl|loxAfr1|scaffold_6637 (44959-44653)
               

               
               137-579, gnl|mm7|chr9 (50901366-50901097)
               

               
               137-579, gnl|Mm7|chr9 (50901354-50900985)
               

               
               137-579, gnl|oryCun1|scaffold_211749 (12737-13010)
               

               
               137-579, gnl|panTro1|chr9 (113061674-113061958)
               

               
               137-579, gnl|rheMac2|chr14 (110159223-110159514)
               

               
               137-579, gnl|rn3|chr8 (54285202-54284951)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               liv (0.146284)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)

	137-579, gnl\|bosTau2\|chr25 (5357542-5357103)
	137-579, gnl\|canFam2\|chr5 (24398741-24398439)
	137-579, gnl\|dasNov1\|scaffold_200308 (302-4)
	137-579, gnl\|echTel1\|scaffold_323952 (100477-100791)
	137-579, gnl\|hg17\|chr11 (111071760-111072041)
	137-579, gnl\|Hg17\|chr11 (111071759-111072121)
	137-579, gnl\|loxAfr1\|scaffold_6637 (44959-44653)
	137-579, gnl\|mm7\|chr9 (50901366-50901097)
	137-579, gnl\|Mm7\|chr9 (50901354-50900985)
	137-579, gnl\|oryCun1\|scaffold_211749 (12737-13010)
	137-579, gnl\|panTro1\|chr9 (113061674-113061958)
	137-579, gnl\|rheMac2\|chr14 (110159223-110159514)
	137-579, gnl\|rn3\|chr8 (54285202-54284951)