Non-Coding RNA Search

rpliv0136_b3.y1

Sequence:


               
               CTCTAGCTTACATTATGTTCATGTTTTTATTATCCATGTATTCAATATTTAGATTTTTAA
AAATATGTTGGAATAATACAACTAACTCAGATAACATATACCTCTTTTTCACTAAAATGA
CTATTTAAAGTTACAGTTTTATAATCTAAAGCTCTAGCCTAAAAGAACCTGTAAGTCAGT
GTCTTTGTCTCTGACTACACTCTGCCTTTGATGTCCACACCAATAATGGCAGAGAAGGAA
GCTGGGGAATTTTCCACAAGGGATGGCCTGATCATGTAGGGAGGAGCCAAGAGTCATGAT
CGTTGGGAGTAATCAAATGCCTCTGAAAATGTCATCTGTTGAGCACTACAGAATGCCATC
AGCATCACACTAATAAGTTAAATTCAATTATGATATTTGAAAACTCAAGAAAAAATATCA
G

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTAGCTTACATTATGTTCATGTTTTTATTATCCATGTATTCAATATTTAGATTTTTAA
AAATATGTTGGAATAATACAACTAACTCAGATAACATATACCTCTTTTTCACTAAAATGA
CTATTTAAAGTTACAGTTTTATAATCTAAAGCTCTAGCCTAAAAGAACCTGTAAGTCAGT
GTCTTTGTCTCTGACTACACTCTGCCTTTGATGTCCACACCAATAATGGCAGAGAAGGAA
GCTGGGGAATTTTCCACAAGGGATGGCCTGATCATGTAGGGAGGAGCCAAGAGTCATGAT
CGTTGGGAGTAATCAAATGCCTCTGAAAATGTCATCTGTTGAGCACTACAGAATGCCATC
AGCATCACACTAATAAGTTAAATTCAATTATGATATTTGAAAACTCAAGAAAAAATATCA
G

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               95-212, - strand, RNAz p=0.817516

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               95-212, - strand, RNAz p=0.817516

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               20-418, gnl|bosTau2|chr13 (45843530-45843936)
               

               
               20-418, gnl|canFam2|chr1 (69688906-69689110)
               

               
               20-418, gnl|dasNov1|scaffold_102002 (4118-3852)
               

               
               20-418, gnl|hg17|chr6 (128364652-128364934)
               

               
               20-418, gnl|Hg17|chr6 (128365104-128364669)
               

               
               20-418, gnl|loxAfr1|scaffold_3975 (53086-53366)
               

               
               20-418, gnl|mm7|chr10 (28344172-28343936)
               

               
               20-418, gnl|Mm7|chr10 (28343795-28344152)
               

               
               20-418, gnl|monDom2|scaffold_0 (85273932-85273678)
               

               
               20-418, gnl|oryCun1|scaffold_179417 (52075-51815)
               

               
               20-418, gnl|panTro1|chr5 (130904633-130904915)
               

               
               20-418, gnl|rheMac2|chr4 (135891539-135891270)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-418, gnl|bosTau2|chr13 (45843530-45843936)
               

               
               20-418, gnl|canFam2|chr1 (69688906-69689110)
               

               
               20-418, gnl|dasNov1|scaffold_102002 (4118-3852)
               

               
               20-418, gnl|hg17|chr6 (128364652-128364934)
               

               
               20-418, gnl|Hg17|chr6 (128365104-128364669)
               

               
               20-418, gnl|loxAfr1|scaffold_3975 (53086-53366)
               

               
               20-418, gnl|mm7|chr10 (28344172-28343936)
               

               
               20-418, gnl|Mm7|chr10 (28343795-28344152)
               

               
               20-418, gnl|monDom2|scaffold_0 (85273932-85273678)
               

               
               20-418, gnl|oryCun1|scaffold_179417 (52075-51815)
               

               
               20-418, gnl|panTro1|chr5 (130904633-130904915)
               

               
               20-418, gnl|rheMac2|chr4 (135891539-135891270)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               liv (0.146284)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)

	20-418, gnl\|bosTau2\|chr13 (45843530-45843936)
	20-418, gnl\|canFam2\|chr1 (69688906-69689110)
	20-418, gnl\|dasNov1\|scaffold_102002 (4118-3852)
	20-418, gnl\|hg17\|chr6 (128364652-128364934)
	20-418, gnl\|Hg17\|chr6 (128365104-128364669)
	20-418, gnl\|loxAfr1\|scaffold_3975 (53086-53366)
	20-418, gnl\|mm7\|chr10 (28344172-28343936)
	20-418, gnl\|Mm7\|chr10 (28343795-28344152)
	20-418, gnl\|monDom2\|scaffold_0 (85273932-85273678)
	20-418, gnl\|oryCun1\|scaffold_179417 (52075-51815)
	20-418, gnl\|panTro1\|chr5 (130904633-130904915)
	20-418, gnl\|rheMac2\|chr4 (135891539-135891270)