Non-Coding RNA Search

rpliv0136_j10.y1

Sequence:


               
               TGAAGTTACCTTCTCTTTGTTTTTACATATTTGAAGTTACACCTTTAAAGACTGATGCCA
TGAATCAGTATAGTTGCTGTACATTTTATGATTTTGCTGTCATCTGAAAATTTTATGAGC
ATAACATTATTTATTACCATAAATAGCAAAATCCTAAATGTCCAAAAAAACTAGCTTAAA
AATGTTTCAAGATAGTTCTGATTGGATATTAATGATTTGGTGAAGTGAATGAATTAACAT
TAGAGATACGCTGGCACTAAGCTTCTATAGTTTTTTAGGTCTTCCTTGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAGTTACCTTCTCTTTGTTTTTACATATTTGAAGTTACACCTTTAAAGACTGATGCCA
TGAATCAGTATAGTTGCTGTACATTTTATGATTTTGCTGTCATCTGAAAATTTTATGAGC
ATAACATTATTTATTACCATAAATAGCAAAATCCTAAATGTCCAAAAAAACTAGCTTAAA
AATGTTTCAAGATAGTTCTGATTGGATATTAATGATTTGGTGAAGTGAATGAATTAACAT
TAGAGATACGCTGGCACTAAGCTTCTATAGTTTTTTAGGTCTTCCTTGCAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-234, + strand, RNAz p=0.994067

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-234, + strand, RNAz p=0.994067

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-291, gnl|bosTau2|chr12 (22757747-22757463)
               

               
               1-291, gnl|canFam2|chr22 (28639892-28640377)
               

               
               1-291, gnl|echTel1|scaffold_324860 (44371-43912)
               

               
               1-291, gnl|galGal2|chr1 (153711063-153710567)
               

               
               1-291, gnl|hg17|chr13 (70910908-70911385)
               

               
               1-291, gnl|Hg17|chr13 (70911424-70911139)
               

               
               1-291, gnl|mm7|chr14 (92139496-92139974)
               

               
               1-291, gnl|Mm7|chr14 (92140007-92139726)
               

               
               1-291, gnl|monDom2|scaffold_8 (7261030-7261561)
               

               
               1-291, gnl|oryCun1|scaffold_213547 (239340-238868)
               

               
               1-291, gnl|panTro1|chr14 (53390504-53390981)
               

               
               1-291, gnl|rheMac2|chr17 (51884137-51884614)
               

               
               1-291, gnl|rn3|chr15 (81207566-81208031)
               

               
               1-291, gnl|xenTro1|scaffold_107 (1261003-1260550)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-291, gnl|bosTau2|chr12 (22757747-22757463)
               

               
               1-291, gnl|canFam2|chr22 (28639892-28640377)
               

               
               1-291, gnl|echTel1|scaffold_324860 (44371-43912)
               

               
               1-291, gnl|galGal2|chr1 (153711063-153710567)
               

               
               1-291, gnl|hg17|chr13 (70910908-70911385)
               

               
               1-291, gnl|Hg17|chr13 (70911424-70911139)
               

               
               1-291, gnl|mm7|chr14 (92139496-92139974)
               

               
               1-291, gnl|Mm7|chr14 (92140007-92139726)
               

               
               1-291, gnl|monDom2|scaffold_8 (7261030-7261561)
               

               
               1-291, gnl|oryCun1|scaffold_213547 (239340-238868)
               

               
               1-291, gnl|panTro1|chr14 (53390504-53390981)
               

               
               1-291, gnl|rheMac2|chr17 (51884137-51884614)
               

               
               1-291, gnl|rn3|chr15 (81207566-81208031)
               

               
               1-291, gnl|xenTro1|scaffold_107 (1261003-1260550)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

Help | Less info


               
               liv (0.146284)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)

	1-291, gnl\|bosTau2\|chr12 (22757747-22757463)
	1-291, gnl\|canFam2\|chr22 (28639892-28640377)
	1-291, gnl\|echTel1\|scaffold_324860 (44371-43912)
	1-291, gnl\|galGal2\|chr1 (153711063-153710567)
	1-291, gnl\|hg17\|chr13 (70910908-70911385)
	1-291, gnl\|Hg17\|chr13 (70911424-70911139)
	1-291, gnl\|mm7\|chr14 (92139496-92139974)
	1-291, gnl\|Mm7\|chr14 (92140007-92139726)
	1-291, gnl\|monDom2\|scaffold_8 (7261030-7261561)
	1-291, gnl\|oryCun1\|scaffold_213547 (239340-238868)
	1-291, gnl\|panTro1\|chr14 (53390504-53390981)
	1-291, gnl\|rheMac2\|chr17 (51884137-51884614)
	1-291, gnl\|rn3\|chr15 (81207566-81208031)
	1-291, gnl\|xenTro1\|scaffold_107 (1261003-1260550)