Non-Coding RNA Search

rpliv0136_n7.y1

Sequence:


               
               TCCAGACGCAAGTGCAGGCGACCAGATGGGACATCCTCCAGGGTCAGCCACTGTGGAAGC
AGGCAGGGTTAAGACTTGGGGGTATGGAGACAGGGACTATGAGAATGAGACATGCATCAA
AATCAGGAGGGATTGTCAATTCTAATTCCATGCTCACCTCATCAAGGAAACCACTGTTTA
GGACTGTGGTGAGGCTTACTTTGCACCTGTAGAAGATTAAAATTAAGGTCTATATATgga
gttccctggtggcctagcagttgaaaatctggcattgtcactggtgtgacataggttcta
ttcctggccggggGAACTTGTGCATGCTGCAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCAGACGCAAGTGCAGGCGACCAGATGGGACATCCTCCAGGGTCAGCCACTGTGGAAGC
AGGCAGGGTTAAGACTTGGGGGTATGGAGACAGGGACTATGAGAATGAGACATGCATCAA
AATCAGGAGGGATTGTCAATTCTAATTCCATGCTCACCTCATCAAGGAAACCACTGTTTA
GGACTGTGGTGAGGCTTACTTTGCACCTGTAGAAGATTAAAATTAAGGTCTATATATgga
gttccctggtggcctagcagttgaaaatctggcattgtcactggtgtgacataggttcta
ttcctggccggggGAACTTGTGCATGCTGCAGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               24-143, + strand, RNAz p=0.777169

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               24-143, + strand, RNAz p=0.777169

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-143, gnl|bosTau2|chr5 (33480349-33480490)
               

               
               1-143, gnl|canFam2|chr10 (3439952-3440024)
               

               
               1-143, gnl|dasNov1|scaffold_51582 (6014-6105)
               

               
               1-143, gnl|echTel1|scaffold_325469 (49099-49163)
               

               
               1-143, gnl|fr1|chrUn (146393006-146392892)
               

               
               1-143, gnl|hg17|chr12 (54818141-54818230)
               

               
               1-143, gnl|Hg17|chr12 (54818283-54818140)
               

               
               1-143, gnl|loxAfr1|scaffold_13800 (46896-46987)
               

               
               1-143, gnl|mm7|chr10 (128018287-128018222)
               

               
               1-143, gnl|oryCun1|scaffold_213038 (51063-50984)
               

               
               1-143, gnl|panTro1|chr10 (56066544-56066633)
               

               
               1-143, gnl|rheMac2|chr11 (53196275-53196364)
               

               
               1-143, gnl|rn3|chr7 (1798007-1797942)
               

               
               1-143, gnl|tetNig1|chr9 (3976424-3976553)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-143, gnl|bosTau2|chr5 (33480349-33480490)
               

               
               1-143, gnl|canFam2|chr10 (3439952-3440024)
               

               
               1-143, gnl|dasNov1|scaffold_51582 (6014-6105)
               

               
               1-143, gnl|echTel1|scaffold_325469 (49099-49163)
               

               
               1-143, gnl|fr1|chrUn (146393006-146392892)
               

               
               1-143, gnl|hg17|chr12 (54818141-54818230)
               

               
               1-143, gnl|Hg17|chr12 (54818283-54818140)
               

               
               1-143, gnl|loxAfr1|scaffold_13800 (46896-46987)
               

               
               1-143, gnl|mm7|chr10 (128018287-128018222)
               

               
               1-143, gnl|oryCun1|scaffold_213038 (51063-50984)
               

               
               1-143, gnl|panTro1|chr10 (56066544-56066633)
               

               
               1-143, gnl|rheMac2|chr11 (53196275-53196364)
               

               
               1-143, gnl|rn3|chr7 (1798007-1797942)
               

               
               1-143, gnl|tetNig1|chr9 (3976424-3976553)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               liv (0.146284)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)

	1-143, gnl\|bosTau2\|chr5 (33480349-33480490)
	1-143, gnl\|canFam2\|chr10 (3439952-3440024)
	1-143, gnl\|dasNov1\|scaffold_51582 (6014-6105)
	1-143, gnl\|echTel1\|scaffold_325469 (49099-49163)
	1-143, gnl\|fr1\|chrUn (146393006-146392892)
	1-143, gnl\|hg17\|chr12 (54818141-54818230)
	1-143, gnl\|Hg17\|chr12 (54818283-54818140)
	1-143, gnl\|loxAfr1\|scaffold_13800 (46896-46987)
	1-143, gnl\|mm7\|chr10 (128018287-128018222)
	1-143, gnl\|oryCun1\|scaffold_213038 (51063-50984)
	1-143, gnl\|panTro1\|chr10 (56066544-56066633)
	1-143, gnl\|rheMac2\|chr11 (53196275-53196364)
	1-143, gnl\|rn3\|chr7 (1798007-1797942)
	1-143, gnl\|tetNig1\|chr9 (3976424-3976553)