Non-Coding RNA Search

rpliv0138_n8.y1

Sequence:


               
               GGTTGGAGGTGCATTTGCTCCCCCTTTGAAAGATTTGTGTCGATTCCTAAAAGAAAATGC
AGAATATGGAGTAGCTCCTGAATGGGGAGATGTAGTTAAGCAGTCTGGATTTCTTCCAGA
AAGTATGTATGAACGTATTCTCACTGGTCCTGTTGTGAGAGAGGAAGTAAGCAGGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTGGAGGTGCATTTGCTCCCCCTTTGAAAGATTTGTGTCGATTCCTAAAAGAAAATGC
AGAATATGGAGTAGCTCCTGAATGGGGAGATGTAGTTAAGCAGTCTGGATTTCTTCCAGA
AAGTATGTATGAACGTATTCTCACTGGTCCTGTTGTGAGAGAGGAAGTAAGCAGGCG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-90, - strand, RNAz p=0.969365

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-90, - strand, RNAz p=0.969365

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-121, gnl|bosTau2|chr18 (21088431-21088552)
               

               
               1-121, gnl|canFam2|chr2 (65227998-65227837)
               

               
               1-121, gnl|danRer3|chr23 (21083917-21084089)
               

               
               1-121, gnl|dasNov1|scaffold_30870 (7839-7677)
               

               
               1-121, gnl|echTel1|scaffold_111637 (487-317)
               

               
               1-121, gnl|fr1|chrUn (10450547-10450415)
               

               
               1-121, gnl|galGal2|chr11 (4940266-4940101)
               

               
               1-121, gnl|hg17|chr16 (51912922-51913085)
               

               
               1-121, gnl|Hg17|chr16 (51912938-51913059)
               

               
               1-121, gnl|loxAfr1|scaffold_9218 (57290-57463)
               

               
               1-121, gnl|mm7|chr8 (89641655-89641812)
               

               
               1-121, gnl|Mm7|chr8 (89641674-89641795)
               

               
               1-121, gnl|monDom2|scaffold_35 (19089206-19089365)
               

               
               1-121, gnl|oryCun1|scaffold_187215 (10860-11023)
               

               
               1-121, gnl|panTro1|chr18 (45968276-45968439)
               

               
               1-121, gnl|rheMac2|chr20 (51558160-51558323)
               

               
               1-121, gnl|rn3|chr19 (17120994-17120843)
               

               
               1-121, gnl|tetNig1|chr5 (670406-670289)
               

               
               1-121, gnl|xenTro1|scaffold_276 (962833-962671)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-121, gnl|bosTau2|chr18 (21088431-21088552)
               

               
               1-121, gnl|canFam2|chr2 (65227998-65227837)
               

               
               1-121, gnl|danRer3|chr23 (21083917-21084089)
               

               
               1-121, gnl|dasNov1|scaffold_30870 (7839-7677)
               

               
               1-121, gnl|echTel1|scaffold_111637 (487-317)
               

               
               1-121, gnl|fr1|chrUn (10450547-10450415)
               

               
               1-121, gnl|galGal2|chr11 (4940266-4940101)
               

               
               1-121, gnl|hg17|chr16 (51912922-51913085)
               

               
               1-121, gnl|Hg17|chr16 (51912938-51913059)
               

               
               1-121, gnl|loxAfr1|scaffold_9218 (57290-57463)
               

               
               1-121, gnl|mm7|chr8 (89641655-89641812)
               

               
               1-121, gnl|Mm7|chr8 (89641674-89641795)
               

               
               1-121, gnl|monDom2|scaffold_35 (19089206-19089365)
               

               
               1-121, gnl|oryCun1|scaffold_187215 (10860-11023)
               

               
               1-121, gnl|panTro1|chr18 (45968276-45968439)
               

               
               1-121, gnl|rheMac2|chr20 (51558160-51558323)
               

               
               1-121, gnl|rn3|chr19 (17120994-17120843)
               

               
               1-121, gnl|tetNig1|chr5 (670406-670289)
               

               
               1-121, gnl|xenTro1|scaffold_276 (962833-962671)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               liv (0.146284)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)

	1-121, gnl\|bosTau2\|chr18 (21088431-21088552)
	1-121, gnl\|canFam2\|chr2 (65227998-65227837)
	1-121, gnl\|danRer3\|chr23 (21083917-21084089)
	1-121, gnl\|dasNov1\|scaffold_30870 (7839-7677)
	1-121, gnl\|echTel1\|scaffold_111637 (487-317)
	1-121, gnl\|fr1\|chrUn (10450547-10450415)
	1-121, gnl\|galGal2\|chr11 (4940266-4940101)
	1-121, gnl\|hg17\|chr16 (51912922-51913085)
	1-121, gnl\|Hg17\|chr16 (51912938-51913059)
	1-121, gnl\|loxAfr1\|scaffold_9218 (57290-57463)
	1-121, gnl\|mm7\|chr8 (89641655-89641812)
	1-121, gnl\|Mm7\|chr8 (89641674-89641795)
	1-121, gnl\|monDom2\|scaffold_35 (19089206-19089365)
	1-121, gnl\|oryCun1\|scaffold_187215 (10860-11023)
	1-121, gnl\|panTro1\|chr18 (45968276-45968439)
	1-121, gnl\|rheMac2\|chr20 (51558160-51558323)
	1-121, gnl\|rn3\|chr19 (17120994-17120843)
	1-121, gnl\|tetNig1\|chr5 (670406-670289)
	1-121, gnl\|xenTro1\|scaffold_276 (962833-962671)