Non-Coding RNA Search

rplun0103_c20.y1

Sequence:


               
               AAAATGTATCCTGCCTTTCGGAAGTTCTGTGCCATCCGAGAAAAGCTGGACCCCACAGGG
ATGTTCCTTAACGCCTATCTGGAGAAGGTGTTCTACTGAGGCAGAAATAGAAAACAAGTC
AAGCCCACCCTGTCCCATTCCCCGGGCCCACCTTCCCCGAGGCTGAAGGCTCCAACCCTC
ACACCAACATACCATGGTTCTATTTCTCTGAAGGGCCCTGACTGATATGTAAGGAAAGAG
ATGAATTGGTGAAGTAAATACAGAGAAGAGCGTGCAGGCTAAACCCTGAGGCTTGAGAAA
TGGCAAAGTCCAGATCGCTCCCATGTTCTGCAGATGAGGAAACTGAGGCTCAGAGAGGTG
ATGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAATGTATCCTGCCTTTCGGAAGTTCTGTGCCATCCGAGAAAAGCTGGACCCCACAGGG
ATGTTCCTTAACGCCTATCTGGAGAAGGTGTTCTACTGAGGCAGAAATAGAAAACAAGTC
AAGCCCACCCTGTCCCATTCCCCGGGCCCACCTTCCCCGAGGCTGAAGGCTCCAACCCTC
ACACCAACATACCATGGTTCTATTTCTCTGAAGGGCCCTGACTGATATGTAAGGAAAGAG
ATGAATTGGTGAAGTAAATACAGAGAAGAGCGTGCAGGCTAAACCCTGAGGCTTGAGAAA
TGGCAAAGTCCAGATCGCTCCCATGTTCTGCAGATGAGGAAACTGAGGCTCAGAGAGGTG
ATGAT

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-172, gnl|bosTau2|chr5 (33867180-33867010)
               

               
               1-172, gnl|canFam2|chr25 (32997217-32996994)
               

               
               1-172, gnl|echTel1|scaffold_207666 (4027-4266)
               

               
               1-172, gnl|galGal2|chr3 (103107714-103107964)
               

               
               1-172, gnl|hg17|chr8 (27502371-27502591)
               

               
               1-172, gnl|Hg17|chr8 (27502409-27502573)
               

               
               1-172, gnl|loxAfr1|scaffold_87992 (1949-1706)
               

               
               1-172, gnl|mm7|chr14 (60848168-60847948)
               

               
               1-172, gnl|Mm7|chr14 (60848128-60847964)
               

               
               1-172, gnl|oryCun1|scaffold_196173 (44859-44661)
               

               
               1-172, gnl|panTro1|chr7 (28475314-28475534)
               

               
               1-172, gnl|rheMac2|chr8 (27735246-27735467)
               

               
               1-172, gnl|rn3|chr15 (45427405-45427181)
               


               
               178-364, gnl|bosTau2|chr5 (33863573-33863386)
               

               
               178-364, gnl|Hg17|chr8 (27504976-27505153)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-172, gnl|bosTau2|chr5 (33867180-33867010)
               

               
               1-172, gnl|canFam2|chr25 (32997217-32996994)
               

               
               1-172, gnl|echTel1|scaffold_207666 (4027-4266)
               

               
               1-172, gnl|galGal2|chr3 (103107714-103107964)
               

               
               1-172, gnl|hg17|chr8 (27502371-27502591)
               

               
               1-172, gnl|Hg17|chr8 (27502409-27502573)
               

               
               1-172, gnl|loxAfr1|scaffold_87992 (1949-1706)
               

               
               1-172, gnl|mm7|chr14 (60848168-60847948)
               

               
               1-172, gnl|Mm7|chr14 (60848128-60847964)
               

               
               1-172, gnl|oryCun1|scaffold_196173 (44859-44661)
               

               
               1-172, gnl|panTro1|chr7 (28475314-28475534)
               

               
               1-172, gnl|rheMac2|chr8 (27735246-27735467)
               

               
               1-172, gnl|rn3|chr15 (45427405-45427181)
               


               
               178-364, gnl|bosTau2|chr5 (33863573-33863386)
               

               
               178-364, gnl|Hg17|chr8 (27504976-27505153)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               lun (0.150489)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)

	1-172, gnl\|bosTau2\|chr5 (33867180-33867010)
	1-172, gnl\|canFam2\|chr25 (32997217-32996994)
	1-172, gnl\|echTel1\|scaffold_207666 (4027-4266)
	1-172, gnl\|galGal2\|chr3 (103107714-103107964)
	1-172, gnl\|hg17\|chr8 (27502371-27502591)
	1-172, gnl\|Hg17\|chr8 (27502409-27502573)
	1-172, gnl\|loxAfr1\|scaffold_87992 (1949-1706)
	1-172, gnl\|mm7\|chr14 (60848168-60847948)
	1-172, gnl\|Mm7\|chr14 (60848128-60847964)
	1-172, gnl\|oryCun1\|scaffold_196173 (44859-44661)
	1-172, gnl\|panTro1\|chr7 (28475314-28475534)
	1-172, gnl\|rheMac2\|chr8 (27735246-27735467)
	1-172, gnl\|rn3\|chr15 (45427405-45427181)

	178-364, gnl\|bosTau2\|chr5 (33863573-33863386)
	178-364, gnl\|Hg17\|chr8 (27504976-27505153)